Miyakogusa Predicted Gene

Lj3g3v2476560.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3SF48_LOTJA 573 93.9 93.9 (tr|I3SF48) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT2G46550.1 148 31.1 44.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19112264-19113457 REVERSE LENGTH=397

Medicago Medtr7g117715.1 344 46.9 56.0 | transmembrane protein, putative | HC | chr7:48879055-48876354 | 20130731

Soybean Glyma03g41950.1 389 54.1 62.4

LJGI gnl|LJGI|TC69184 2500 99.8 99.8 weakly similar to UniRef100_Q8L732 Cluster: Expressed protein; n=1; Arabidopsis thaliana|Rep: Expressed protein - Arabidopsis thaliana (Mouse-ear cress), partial (32%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v2476560.1 length: 422 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 90-118

Seg seg seg NA 89-113
395-412

Wolf-PSORT

Lj3g3v2476560.1 nucl 6, cyto 3, cysk_nucl 3, nucl_plas 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v2476560.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3SF48_LOTJA	573	93.9	93.9	(tr\|I3SF48) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT2G46550.1	148	31.1	44.1	\| Symbols: \| unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:19112264-19113457 REVERSE LENGTH=397
Medicago	Medtr7g117715.1	344	46.9	56.0	\| transmembrane protein, putative \| HC \| chr7:48879055-48876354 \| 20130731
Soybean	Glyma03g41950.1	389	54.1	62.4
LJGI	gnl\|LJGI\|TC69184	2500	99.8	99.8	weakly similar to UniRef100_Q8L732 Cluster: Expressed protein; n=1; Arabidopsis thaliana\|Rep: Expressed protein - Arabidopsis thaliana (Mouse-ear cress), partial (32%)

no_ID
Lj3g3v2476560.1				length: 422 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	90-118
Seg	seg	seg	NA	89-113 395-412