Miyakogusa Predicted Gene
- Lj3g3v2455430.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KZU4_SOYBN |
1736 |
86.7 |
92.4 |
(tr|K7KZU4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G46520.1 |
1417 |
69.5 |
83.2 |
| Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972 |
| Medicago |
Medtr8g027450.1 |
1657 |
82.7 |
90.8 |
| importin-alpha re-exporter, putative | HC | chr8:9753702-9749040 | 20130731 |
| Soybean |
Glyma07g06070.1 |
1031 |
83.7 |
89.3 |
|
| LJGI |
gnl|LJGI|TC82567 |
1550 |
99.6 |
99.6 |
similar to UniRef100_A7QWF1 Cluster: Chromosome undetermined scaffold_203, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_203, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2455430.1 |
length: 975 aa. |
| IPR001494 |
Importin-beta, N-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005643 |
nuclear pore |
|
|
| Biological Process |
GO:0006886 |
intracellular protein transport |
|
|
| Molecular Function |
GO:0008565 |
protein transporter activity |
|
|
| HMMPfam |
PF03810 |
IBN_N |
3.6e-12 |
29-99 |
| HMMSmart |
SM00913 |
Importin-beta |
4.5e-10 |
29-100 |
| ProfileScan |
PS50166 |
IMPORTIN_B_NT |
18.532 |
29-100 |
| IPR005043 |
CAS/CSE, C-terminal |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF03378 |
CAS_CSE1 |
1.5e-152 |
534-965 |
| IPR011989 |
Armadillo-like helical |
| Gene3D |
G3DSA:1.25.10.10 |
no description |
7.5e-111 |
927-967 |
| IPR013713 |
Exportin/Importin, Cse1-like |
| Biological Process |
GO:0006886 |
intracellular protein transport |
|
|
| HMMPfam |
PF08506 |
Cse1 |
1.8e-137 |
158-533 |
| IPR016024 |
Armadillo-type fold |
| Molecular Function |
GO:0005488 |
binding |
|
|
| superfamily |
SSF48371 |
ARM |
5.6e-131 |
1-969 |
| no_ID |
|
| HMMPanther |
PTHR10997 |
IMPORTIN-7, |
0 |
1-975 |
| HMMPanther |
PTHR10997:SF8 |
IMPORTIN-ALPHA |
0 |
1-975 |
| Seg |
seg |
seg |
NA |
199-210 |
- Wolf-PSORT
Lj3g3v2455430.1 golg 3, nucl 2, plas 2, vacu 2, E.R. 2, nucl_plas 2, E.R._vacu 2, E.R._plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2455430.1 |
|