Miyakogusa Predicted Gene

Lj3g3v2400840.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KZW9_SOYBN 410 50.9 62.7 (tr|K7KZW9) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G30240.2 102 31.8 46.0 | Symbols: | unknown protein; Has 169 Blast hits to 168 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE LENGTH=827

Medicago Medtr8g028030.1 346 48.9 61.9 | rRNA processing/ribosome biogenesis protein | HC | chr8:10367089-10377430 | 20130731

Soybean Glyma07g06460.1 409 50.9 62.7

LJGI gnl|LJGI|TC66722 1269 99.7 99.7 similar to UniRef100_A7P8V0 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v2400840.1 length: 422 aa.

no_ID

method AccNumber shortName E-value location

Seg seg seg NA 88-103
142-165

Wolf-PSORT

Lj3g3v2400840.1 plas 4.5, nucl 4, E.R._plas 3, chlo 2, cysk_nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v2400840.1 Not targeted -48.327 -0.075 -9.009 71.31% -39.243

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KZW9_SOYBN	410	50.9	62.7	(tr\|K7KZW9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G30240.2	102	31.8	46.0	\| Symbols: \| unknown protein; Has 169 Blast hits to 168 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). \| chr1:10641241-10645838 REVERSE LENGTH=827
Medicago	Medtr8g028030.1	346	48.9	61.9	\| rRNA processing/ribosome biogenesis protein \| HC \| chr8:10367089-10377430 \| 20130731
Soybean	Glyma07g06460.1	409	50.9	62.7
LJGI	gnl\|LJGI\|TC66722	1269	99.7	99.7	similar to UniRef100_A7P8V0 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)

no_ID
Lj3g3v2400840.1				length: 422 aa.
method	AccNumber	shortName	E-value	location
Seg	seg	seg	NA	88-103 142-165