Miyakogusa Predicted Gene
- Lj3g3v2298670.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S4S4_MEDTR |
201 |
93.8 |
100.0 |
(tr|I3S4S4) Proteasome subunit beta type OS=Medicago truncatula PE=2 SV=1 |
| TAIR_pep |
AT1G56450.1 |
175 |
79.4 |
91.8 |
| Symbols: PBG1 | 20S proteasome beta subunit G1 | chr1:21141970-21144186 FORWARD LENGTH=246 |
| Medicago |
Medtr4g060540.1 |
201 |
93.8 |
100.0 |
| proteasome subunit beta protein | HC | chr4:22273335-22277926 | 20130731 |
| Soybean |
Glyma19g43120.1 |
198 |
91.8 |
100.0 |
|
| LJGI |
gnl|LJGI|TC71377 |
583 |
100.0 |
100.0 |
similar to UniRef100_A7NZG0 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (91%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2298670.1 |
length: 97 aa. |
| IPR001353 |
Proteasome, subunit alpha/beta |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004298 |
threonine-type endopeptidase activity |
|
|
| Cellular Component |
GO:0005839 |
proteasome core complex |
|
|
| Biological Process |
GO:0051603 |
proteolysis involved in cellular protein catabolic process |
|
|
| HMMPfam |
PF00227 |
Proteasome |
7.7e-10 |
2-63 |
| IPR023333 |
Proteasome B-type subunit |
| Molecular Function |
GO:0004298 |
threonine-type endopeptidase activity |
|
|
| ProfileScan |
PS51476 |
PROTEASOME_B_2 |
15.295 |
1-64 |
| no_ID |
|
| Gene3D |
G3DSA:3.60.20.10 |
no description |
2.3e-21 |
1-88 |
| HMMPanther |
PTHR11599 |
PROTEASOME |
8.6e-37 |
1-91 |
| HMMPanther |
PTHR11599:SF5 |
PROTEASOME |
8.6e-37 |
1-91 |
| superfamily |
SSF56235 |
N-terminal |
4.2e-17 |
1-85 |
- Wolf-PSORT
Lj3g3v2298670.1 cyto 9.5, cyto_E.R. 5.5, cysk 2, mito 1, golg 1, cysk_nucl 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2298670.1 |
|