Miyakogusa Predicted Gene

Lj3g3v2248300.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KH65_SOYBN 1729 91.3 93.8 (tr|I1KH65) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G52360.1 1628 83.4 90.6 | Symbols: | Coatomer, beta' subunit | chr1:19499282-19505397 FORWARD LENGTH=926
Medicago Medtr4g011950.1 1717 89.2 92.3 | coatomer subunit beta-like protein | HC | chr4:3146350-3132249 | 20130731
Soybean Glyma07g03890.1 1729 91.3 93.8  
LJGI gnl|LJGI|TC66692 1778 99.9 99.9 similar to UniRef100_A7P7E9 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2248300.1 length: 919 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 9.8e-13 91-127
132-171
179-215
220-257
HMMSmart SM00320 WD40 2.4e-11 4-43
46-85
88-127
131-171
174-215
218-257
ProfileScan PS50082 WD_REPEATS_2 15.488 95-127
138-180
181-224
225-266
IPR006692 Coatomer, WD associated region
Molecular Function GO:0005198 structural molecule activity    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030117 membrane coat    
HMMPfam PF04053 Coatomer_WDAD 6.3e-168 319-763
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00067 603-749
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 0.00062 355-365
853-890
IPR016453 Coatomer beta' subunit (COPB2)
HMMPIR PIRSF005567 Coatomer, 0 1-889
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 50.594 11-266
superfamily SSF50978 WD40 1.2e-13 1-297
260-484
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 2e-06 158-172
202-216
244-258
no_ID  
HMMPanther PTHR19876 COATOMER 0 4-915
HMMPanther PTHR19876:SF2 COATOMER 0 4-915
Seg seg seg NA 697-708
862-886
Wolf-PSORT
Lj3g3v2248300.1	nucl 5, chlo 3, cyto 3, cysk_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2248300.1