Miyakogusa Predicted Gene

Lj3g3v2247050.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q7XJI9_GOSHI 827 79.0 82.5 (tr|Q7XJI9) Katanin OS=Gossypium hirsutum GN=KTN1 PE=2 SV=1
TAIR_pep AT1G80350.1 783 75.6 80.3 | Symbols: ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30205499-30208050 REVERSE LENGTH=523
Medicago Medtr4g011810.1 806 78.2 82.7 | katanin p60 ATPase subunit-like protein | HC | chr4:2991759-2987259 | 20130731
Soybean Glyma08g22210.1 797 77.9 81.4  
LJGI gnl|LJGI|TC81811 1388 100.0 100.0 homologue to UniRef100_Q7XJI9 Cluster: Katanin; n=1; Gossypium hirsutum|Rep: Katanin - Gossypium hirsutum (Upland cotton) (Gossypium mexicanum), partial (56%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2247050.1 length: 518 aa.
IPR003593 AAA+ ATPase domain
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 5.3e-17 266-409
IPR003959 ATPase, AAA-type, core
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00004 AAA 3.9e-38 270-407
IPR003960 ATPase, AAA-type, conserved site
Molecular Function GO:0005524 ATP binding    
PatternScan PS00674 AAA NA 379-398
IPR015415 Vps4 oligomerisation, C-terminal
HMMPfam PF09336 Vps4_C 2.5e-08 471-516
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.3e-63 228-516
no_ID  
Gene3D G3DSA:1.10.8.60 no description 1.1e-18 415-499
Gene3D G3DSA:3.40.50.300 no description 4.5e-61 229-414
HMMPanther PTHR23074 AAA 2.8e-245 9-518
HMMPanther PTHR23074:SF19 KATANIN-RELATED 2.8e-245 9-518
Seg seg seg NA 81-94
122-135
145-167
176-192
Wolf-PSORT
Lj3g3v2247050.1	nucl 4, cyto 4, mito 4, cyto_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2247050.1