Miyakogusa Predicted Gene
- Lj3g3v2246970.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
D7M9Q0_ARALL |
87.0 |
65.5 |
87.9 |
(tr|D7M9Q0) RNA recognition motif-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_491436 PE=4 SV=1 |
| TAIR_pep |
AT4G32720.1 |
82.4 |
62.1 |
84.5 |
| Symbols: AtLa1, La1 | La protein 1 | chr4:15787313-15789683 FORWARD LENGTH=433 |
| Medicago |
Medtr1g026890.1 |
75.9 |
78.6 |
85.7 |
| RNA recognition motif protein | HC | chr1:8835899-8830191 | 20130731 |
| Soybean |
Glyma06g08650.1 |
77.4 |
75.9 |
89.7 |
|
| LJGI |
gnl|LJGI|TC67491 |
319 |
96.8 |
96.8 |
similar to UniRef100_A7P5B6 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2246970.1 |
length: 63 aa. |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
1.2e-10 |
5-60 |
| IPR014886 |
RNA-binding motif |
| HMMPfam |
PF08777 |
RRM_3 |
6.8e-11 |
5-60 |
| no_ID |
|
| HMMPanther |
PTHR22792 |
LUPUS |
7.6e-19 |
5-59 |
| HMMPanther |
PTHR22792:SF4 |
RNA-BINDING |
7.6e-19 |
5-59 |
- Wolf-PSORT
Lj3g3v2246970.1 chlo 4, cyto 4, nucl 1.5, cysk_nucl 1.5, mito 1, plas 1, extr 1, golg 1, golg_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2246970.1 |
|