Miyakogusa Predicted Gene

Lj3g3v2172640.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KGY0_SOYBN 711 78.4 83.1 (tr|I1KGY0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G80490.2 624 75.4 86.1 | Symbols: TPR1 | TOPLESS-related 1 | chr1:30261094-30266446 REVERSE LENGTH=1120
Medicago Medtr2g104140.2 680 75.5 80.9 | topless-like protein | HC | chr2:44878912-44871394 | 20130731
Soybean Glyma07g03180.2 711 78.4 83.1  
LJGI gnl|LJGI|TC63678 1746 99.9 99.9 similar to UniRef100_Q8H6S5 Cluster: CTV.2; n=1; Poncirus trifoliata|Rep: CTV.2 - Poncirus trifoliata (Hardy orange), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2172640.1 length: 458 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.5e-08 240-277
HMMSmart SM00320 WD40 25 155-192
195-235
238-277
330-370
383-422
ProfileScan PS50082 WD_REPEATS_2 12.747 245-286
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5.4e-34 69-423
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 14.872 202-286
superfamily SSF50978 WD40 2.4e-36 165-445
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 264-278
no_ID  
HMMPanther PTHR22847 WD40 8.6e-173 40-442
HMMPanther PTHR22847:SF106SUBFAMILY NOT 8.6e-173 40-442
Seg seg seg NA 27-44
193-214
439-453
Wolf-PSORT
Lj3g3v2172640.1	chlo 11, vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2172640.1