Miyakogusa Predicted Gene
- Lj3g3v2037540.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KGU8_SOYBN |
992 |
80.7 |
88.9 |
(tr|I1KGU8) Pectinesterase OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT3G05610.1 |
581 |
50.8 |
71.3 |
| Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1625876-1627976 REVERSE LENGTH=669 |
| Medicago |
Medtr1g083500.1 |
898 |
72.4 |
84.3 |
| pectinesterase/pectinesterase inhibitor | HC | chr1:37158150-37160011 | 20130731 |
| Soybean |
Glyma0248s00220.1 |
993 |
81.2 |
89.2 |
|
| LJGI |
gnl|LJGI|FS339092 |
1394 |
99.3 |
99.3 |
similar to UniRef100_A7Q8F9 Cluster: Chromosome chr5 scaffold_64, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_64, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v2037540.1 |
length: 582 aa. |
| IPR000070 |
Pectinesterase, catalytic |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005618 |
cell wall |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Biological Process |
GO:0042545 |
cell wall modification |
|
|
| HMMPfam |
PF01095 |
Pectinesterase |
8.6e-131 |
256-554 |
| IPR006501 |
Pectinesterase inhibitor |
| Molecular Function |
GO:0004857 |
enzyme inhibitor activity |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Gene3D |
G3DSA:1.20.140.40 |
no description |
4.9e-34 |
54-208 |
| HMMPfam |
PF04043 |
PMEI |
8e-29 |
55-204 |
| HMMSmart |
SM00856 |
Plant |
1.8e-36 |
52-204 |
| HMMTigr |
TIGR01614 |
PME_inhib: |
8.6e-26 |
40-208 |
| superfamily |
SSF101148 |
Plant |
1.8e-29 |
54-211 |
| IPR011050 |
Pectin lyase fold/virulence factor |
| superfamily |
SSF51126 |
Pectin |
9.4e-100 |
249-569 |
| IPR012334 |
Pectin lyase fold |
| Gene3D |
G3DSA:2.160.20.10 |
no description |
1.3e-108 |
253-567 |
| IPR018040 |
Pectinesterase, active site |
| PatternScan |
PS00503 |
PECTINESTERASE_2 |
NA |
400-409 |
| PatternScan |
PS00800 |
PECTINESTERASE_1 |
NA |
281-300 |
| no_ID |
|
| HMMPanther |
PTHR31707 |
FAMILY |
5.9e-234 |
1-571 |
| HMMPanther |
PTHR31707:SF0 |
SUBFAMILY |
5.9e-234 |
1-571 |
| Seg |
seg |
seg |
NA |
17-33 |
- Wolf-PSORT
Lj3g3v2037540.1 cyto 4, E.R. 2, golg 2, cyto_nucl 2, plas 1.5, E.R._vacu 1.5, mito_plas 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v2037540.1 |
|