Miyakogusa Predicted Gene

Lj3g3v1906530.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5BP73_VITVI 590 66.3 75.7 (tr|A5BP73) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0107g00320 PE=4 SV=1
TAIR_pep AT4G33270.1 552 63.0 74.9 | Symbols: CDC20.1 | Transducin family protein / WD-40 repeat family protein | chr4:16044545-16046590 REVERSE LENGTH=457
Medicago Medtr7g106870.1 578 67.6 76.5 | transducin family protein/WD-40 repeat protein | HC | chr7:43528726-43526248 | 20130731
Soybean Glyma03g36300.1 585 66.7 77.4  
LJGI gnl|LJGI|TC70533 200 87.3 87.3 homologue to UniRef100_A7QN78 Cluster: Chromosome undetermined scaffold_131, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome undetermined scaffold_131, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v1906530.1 length: 438 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 5.2e-07 166-199
208-236
248-283
292-330
383-417
HMMSmart SM00320 WD40 5.9e-06 160-199
202-240
244-283
288-330
335-375
378-417
ProfileScan PS50082 WD_REPEATS_2 13.148 167-208
251-283
385-418
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.2e-54 149-420
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 32.430 167-426
superfamily SSF50978 WD40 7e-58 139-431
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 186-200
404-418
no_ID  
HMMPanther PTHR19918 CELL 1.5e-170 19-438
HMMPanther PTHR19918:SF0 SUBFAMILY 1.5e-170 19-438
Seg seg seg NA 96-111
Wolf-PSORT
Lj3g3v1906530.1	mito 5, nucl 4, cyto 2, cysk 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v1906530.1