Miyakogusa Predicted Gene

Lj3g3v1876080.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1M0T4_SOYBN 904 91.5 93.6 (tr|I1M0T4) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G13480.1 740 76.5 83.1 | Symbols: FY | Transducin/WD40 repeat-like superfamily protein | chr5:4326638-4331557 REVERSE LENGTH=647

Medicago Medtr8g038550.1 837 89.2 91.7 | flowering time control FY-like protein | HC | chr8:14279771-14293184 | 20130731

Soybean Glyma13g26820.1 904 91.5 93.6

LJGI gnl|LJGI|TC69721 2000 99.7 99.7 homologue to UniRef100_A4Q377 Cluster: WD40-like; n=1; Medicago truncatula|Rep: WD40-like - Medicago truncatula (Barrel medic), partial (50%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v1876080.1 length: 727 aa.

IPR001680 WD40 repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00400 WD40 3.8e-07 206-238
245-281
289-323
330-365
371-407
418-450

HMMSmart SM00320 WD40 6.7e-06 153-197
200-239
242-281
284-323
326-365
368-408
411-451

ProfileScan PS50082 WD_REPEATS_2 11.411 165-197
207-239
249-290
291-332
333-374
375-407
419-450

IPR015943 WD40/YVTN repeat-like-containing domain

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:2.130.10.10 no description 1.3e-85 166-452

IPR017986 WD40-repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50294 WD_REPEATS_REGION 59.453 165-460

superfamily SSF50978 WD40 4.8e-77 165-451

IPR019775 WD40 repeat, conserved site

PatternScan PS00678 WD_REPEATS_1 NA 310-324

IPR020472 G-protein beta WD-40 repeat

FPrintScan PR00320 GPROTEINBRPT 6.9e-05 268-282
310-324
438-452

no_ID

HMMPanther PTHR22836 WD40 9.3e-263 48-727

Seg seg seg NA 9-62
74-85
531-552
554-617
630-651
664-682

Wolf-PSORT

Lj3g3v1876080.1 nucl 11, chlo 1, cyto 1, vacu 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v1876080.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1M0T4_SOYBN	904	91.5	93.6	(tr\|I1M0T4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G13480.1	740	76.5	83.1	\| Symbols: FY \| Transducin/WD40 repeat-like superfamily protein \| chr5:4326638-4331557 REVERSE LENGTH=647
Medicago	Medtr8g038550.1	837	89.2	91.7	\| flowering time control FY-like protein \| HC \| chr8:14279771-14293184 \| 20130731
Soybean	Glyma13g26820.1	904	91.5	93.6
LJGI	gnl\|LJGI\|TC69721	2000	99.7	99.7	homologue to UniRef100_A4Q377 Cluster: WD40-like; n=1; Medicago truncatula\|Rep: WD40-like - Medicago truncatula (Barrel medic), partial (50%)

IPR001680	WD40 repeat
Lj3g3v1876080.1				length: 727 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00400	WD40	3.8e-07	206-238 245-281 289-323 330-365 371-407 418-450
HMMSmart	SM00320	WD40	6.7e-06	153-197 200-239 242-281 284-323 326-365 368-408 411-451
ProfileScan	PS50082	WD_REPEATS_2	11.411	165-197 207-239 249-290 291-332 333-374 375-407 419-450
IPR015943	WD40/YVTN repeat-like-containing domain
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:2.130.10.10	no description	1.3e-85	166-452
IPR017986	WD40-repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50294	WD_REPEATS_REGION	59.453	165-460
superfamily	SSF50978	WD40	4.8e-77	165-451
IPR019775	WD40 repeat, conserved site
PatternScan	PS00678	WD_REPEATS_1	NA	310-324
IPR020472	G-protein beta WD-40 repeat
FPrintScan	PR00320	GPROTEINBRPT	6.9e-05	268-282 310-324 438-452
no_ID
HMMPanther	PTHR22836	WD40	9.3e-263	48-727
Seg	seg	seg	NA	9-62 74-85 531-552 554-617 630-651 664-682