Miyakogusa Predicted Gene
- Lj3g3v1834250.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7IXZ7_MEDTR |
95.9 |
64.3 |
82.9 |
(tr|G7IXZ7) F-box family-3 OS=Medicago truncatula GN=MTR_3g048290 PE=4 SV=1 |
| TAIR_pep |
AT2G42730.1 |
58.2 |
45.9 |
67.2 |
| Symbols: | F-box family protein | chr2:17787454-17791218 REVERSE LENGTH=737 |
| Medicago |
Medtr3g048290.1 |
97.1 |
56.5 |
76.5 |
| F-box/RNI/FBD-like domain protein | LC | chr3:16129714-16134119 | 20130731 |
| Soybean |
Glyma13g33790.1 |
63.5 |
60.4 |
79.2 |
|
| LJGI |
gnl|LJGI|TC57924 |
194 |
87.3 |
87.3 |
similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_111, whole genome shotgun sequence - Vitis vinifera (Grape), partial (14%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v1834250.1 |
length: 84 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
2.8e-05 |
25-62 |
| superfamily |
SSF81383 |
F-box |
4.2e-08 |
23-61 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
3.5e-05 |
22-60 |
| HMMPanther |
PTHR31639 |
FAMILY |
2.8e-14 |
14-83 |
- Wolf-PSORT
Lj3g3v1834250.1 chlo 3, cyto 3, nucl 2, mito 2, plas 2, nucl_plas 2, mito_plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v1834250.1 |
|