Miyakogusa Predicted Gene

Lj3g3v1729090.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IUG0_MEDTR 1601 77.7 82.6 (tr|G7IUG0) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Medicago truncatula GN=MTR_2g098440 PE=4 SV=1
TAIR_pep AT5G13010.1 1345 68.0 75.7 | Symbols: EMB3011 | RNA helicase family protein | chr5:4122747-4128660 FORWARD LENGTH=1255
Medicago Medtr2g098440.1 1601 77.7 82.6 | Pre-mRNA-splicing factor ATP-dependent RNA helicase | HC | chr2:42091662-42101447 | 20130731
Soybean Glyma15g03660.1 1551 77.4 82.0  
LJGI gnl|LJGI|TC58145 1959 100.0 100.0 homologue to UniRef100_A7QBN2 Cluster: Chromosome chr1 scaffold_75, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_75, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v1729090.2 length: 1027 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 4.6e-13 811-903
HMMSmart SM00490 helicase 4.6e-18 799-903
ProfileScan PS51194 HELICASE_CTER 17.072 764-944
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 3.9e-20 965-1026
HMMSmart SM00847 Helicase 3.2e-14 964-1027
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 3.4e-06 576-727
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 8.2e-30 567-751
ProfileScan PS51192 HELICASE_ATP_BIND_1 19.324 579-742
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.3e-113 564-1026
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.5e-11 569-726
775-914
HMMPanther PTHR18934 ATP-DEPENDENT 1.5e-301 72-1026
HMMPanther PTHR18934:SF68 SUBFAMILY 1.5e-301 72-1026
Seg seg seg NA 78-96
148-176
178-197
261-274
288-297
587-591
889-906
932-949
Wolf-PSORT
Lj3g3v1729090.2	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v1729090.2