Miyakogusa Predicted Gene

Lj3g3v1680390.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3T7H0_LOTJA 699 81.5 81.8 (tr|I3T7H0) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT3G46750.1 70.5 36.8 50.9 | Symbols: | unknown protein; Has 2631 Blast hits to 1984 proteins in 271 species: Archae - 6; Bacteria - 163; Metazoa - 1232; Fungi - 253; Plants - 141; Viruses - 8; Other Eukaryotes - 828 (source: NCBI BLink). | chr3:17219944-17221461 FORWARD LENGTH=388

Medicago Medtr2g097710.1 174 57.4 68.6 | hypothetical protein | HC | chr2:41743211-41744737 | 20130731

Soybean Glyma13g41380.1 196 41.0 52.4

LJGI gnl|LJGI|TC82405 2518 99.4 99.4 similar to UniRef100_Q2HS33 Cluster: Eukaryotic RNA polymerase II heptapeptide repeat; n=1; Medicago truncatula|Rep: Eukaryotic RNA polymerase II heptapeptide repeat - Medicago truncatula (Barrel medic), partial (34%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v1680390.1 length: 433 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 72-93

Seg seg seg NA 32-50
106-116
169-184
223-253

Wolf-PSORT

Lj3g3v1680390.1 nucl 12, chlo 1, plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v1680390.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3T7H0_LOTJA	699	81.5	81.8	(tr\|I3T7H0) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT3G46750.1	70.5	36.8	50.9	\| Symbols: \| unknown protein; Has 2631 Blast hits to 1984 proteins in 271 species: Archae - 6; Bacteria - 163; Metazoa - 1232; Fungi - 253; Plants - 141; Viruses - 8; Other Eukaryotes - 828 (source: NCBI BLink). \| chr3:17219944-17221461 FORWARD LENGTH=388
Medicago	Medtr2g097710.1	174	57.4	68.6	\| hypothetical protein \| HC \| chr2:41743211-41744737 \| 20130731
Soybean	Glyma13g41380.1	196	41.0	52.4
LJGI	gnl\|LJGI\|TC82405	2518	99.4	99.4	similar to UniRef100_Q2HS33 Cluster: Eukaryotic RNA polymerase II heptapeptide repeat; n=1; Medicago truncatula\|Rep: Eukaryotic RNA polymerase II heptapeptide repeat - Medicago truncatula (Barrel medic), partial (34%)

no_ID
Lj3g3v1680390.1				length: 433 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	72-93
Seg	seg	seg	NA	32-50 106-116 169-184 223-253