Miyakogusa Predicted Gene
- Lj3g3v1545570.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B7FHX6_MEDTR |
351 |
76.8 |
83.1 |
(tr|B7FHX6) Transcription factor ILR3 OS=Medicago truncatula GN=MTR_2g082640 PE=2 SV=1 |
| TAIR_pep |
AT5G54680.1 |
312 |
67.5 |
77.1 |
| Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234 |
| Medicago |
Medtr2g082640.1 |
351 |
76.8 |
83.1 |
| BHLH domain class transcription factor | HC | chr2:34669163-34671763 | 20130731 |
| Soybean |
Glyma12g16560.1 |
335 |
75.2 |
84.0 |
|
| LJGI |
gnl|LJGI|TC60959 |
1378 |
99.6 |
99.6 |
similar to UniRef100_A7P102 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (77%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v1545570.1 |
length: 236 aa. |
| IPR011598 |
Myc-type, basic helix-loop-helix (bHLH) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| Gene3D |
G3DSA:4.10.280.10 |
no description |
8e-12 |
78-148 |
| HMMPfam |
PF00010 |
HLH |
7.7e-09 |
78-125 |
| HMMSmart |
SM00353 |
helix |
2.7e-08 |
80-131 |
| ProfileScan |
PS50888 |
BHLH |
12.620 |
74-125 |
| superfamily |
SSF47459 |
HLH, |
3.7e-12 |
72-158 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
122-178 |
| HMMPanther |
PTHR23042 |
CIRCADIAN |
2.2e-60 |
1-163 |
| HMMPanther |
PTHR23042:SF20 |
SUBFAMILY |
2.2e-60 |
1-163 |
- Wolf-PSORT
Lj3g3v1545570.1 nucl 9, cysk 2, mito 1, plas 1, golg 1, golg_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v1545570.1 |
|