Miyakogusa Predicted Gene

Lj3g3v1517390.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T8S5_LOTJA 447 100.0 100.0 (tr|I3T8S5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G06400.1 365 79.4 89.4 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-related small GTP-binding family protein | chr1:1951089-1952686 REVERSE LENGTH=216
Medicago Medtr2g083860.1 383 88.5 93.1 | RAB GTPase-like protein A1D | HC | chr2:35195372-35201445 | 20130731
Soybean Glyma13g36530.1 404 89.4 93.6  
LJGI gnl|LJGI|TC57476 1302 100.0 100.0 UniRef100_Q40195 Cluster: Ras-related protein Rab11E; n=1; Lotus japonicus|Rep: Ras-related protein Rab11E - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v1517390.1 length: 218 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 6.4e-43 14-35
37-53
55-77
117-130
152-174
HMMPfam PF00071 Ras 2e-60 15-175
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 3.4e-05 19-217
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 1.4e-11 16-173
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 2.2e-108 14-177
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 1.9e-37 12-170
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 3e-27 11-177
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7.8e-65 9-216
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.2e-70 6-206
HMMPanther PTHR24073 FAMILY 3.7e-122 4-218
HMMPanther PTHR24073:SF87 SUBFAMILY 3.7e-122 4-218
ProfileScan PS51419 RAB 35.226 9-216
Wolf-PSORT
Lj3g3v1517390.1	cyto 9, mito 3, nucl 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v1517390.1