Miyakogusa Predicted Gene

Lj3g3v1507220.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KXS3_SOYBN 1297 79.5 85.4 (tr|K7KXS3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G42700.1 966 60.1 72.6 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:17778464-17782034 FORWARD LENGTH=838

Medicago Medtr4g080110.1 1266 75.6 83.6 | hypothetical protein | HC | chr4:31052262-31057732 | 20130731

Soybean Glyma12g15440.1 1280 79.1 84.5

LJGI gnl|LJGI|TC66291 1114 100.0 100.0 similar to UniRef100_A7PJI5 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (37%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v1507220.1 length: 858 aa.

IPR001619 Sec1-like protein

method AccNumber shortName E-value location

Biological Process GO:0006904 vesicle docking involved in exocytosis

Biological Process GO:0016192 vesicle-mediated transport

HMMPanther PTHR11679 VESICLE 8.3e-41 773-857

HMMPfam PF00995 Sec1 4.2e-05 803-854

superfamily SSF56815 Sec1/munc18-like 0.0073 778-858
207-337

IPR027482 Sec1-like, domain 2

Gene3D G3DSA:3.40.50.1910 no description 7.2e-32 806-857

no_ID

Coil coil coiled-coil NA 648-669

HMMPanther PTHR11679:SF20 SM/SEC1-FAMILY 8.3e-41 773-857

Seg seg seg NA 247-261
322-333
683-703
839-858

Wolf-PSORT

Lj3g3v1507220.1 nucl 5, plas 4, cyto 2, golg_plas 2, mito_plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v1507220.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KXS3_SOYBN	1297	79.5	85.4	(tr\|K7KXS3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G42700.1	966	60.1	72.6	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr2:17778464-17782034 FORWARD LENGTH=838
Medicago	Medtr4g080110.1	1266	75.6	83.6	\| hypothetical protein \| HC \| chr4:31052262-31057732 \| 20130731
Soybean	Glyma12g15440.1	1280	79.1	84.5
LJGI	gnl\|LJGI\|TC66291	1114	100.0	100.0	similar to UniRef100_A7PJI5 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (37%)

IPR001619	Sec1-like protein
Lj3g3v1507220.1				length: 858 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0006904	vesicle docking involved in exocytosis
Biological Process	GO:0016192	vesicle-mediated transport
HMMPanther	PTHR11679	VESICLE	8.3e-41	773-857
HMMPfam	PF00995	Sec1	4.2e-05	803-854
superfamily	SSF56815	Sec1/munc18-like	0.0073	778-858 207-337
IPR027482	Sec1-like, domain 2
Gene3D	G3DSA:3.40.50.1910	no description	7.2e-32	806-857
no_ID
Coil	coil	coiled-coil	NA	648-669
HMMPanther	PTHR11679:SF20	SM/SEC1-FAMILY	8.3e-41	773-857
Seg	seg	seg	NA	247-261 322-333 683-703 839-858