Miyakogusa Predicted Gene

Lj3g3v1145930.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M4E9_SOYBN 1153 89.8 93.3 (tr|I1M4E9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G44600.1 1087 86.5 93.9 | Symbols: CYP71 | cyclophilin71 | chr3:16165368-16169201 REVERSE LENGTH=631
Medicago Medtr2g085075.1 1154 89.2 93.7 | peptidyl-prolyl cis-trans isomerase, putative | HC | chr2:36113579-36121771 | 20130731
Soybean Glyma13g39500.1 1153 89.8 93.3  
LJGI gnl|LJGI|BP063209 761 98.1 98.1 similar to UniRef100_A7PQF9 Cluster: Peptidyl-prolyl cis-trans isomerase; n=1; Vitis vinifera|Rep: Peptidyl-prolyl cis-trans isomerase - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v1145930.1 length: 616 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0022 51-81
92-125
HMMSmart SM00320 WD40 10 44-81
86-125
176-215
232-271
ProfileScan PS50082 WD_REPEATS_2 8.604 50-81
IPR002130 Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain
Molecular Function GO:0003755 peptidyl-prolyl cis-trans isomerase activity    
Biological Process GO:0006457 protein folding    
FPrintScan PR00153 CSAPPISMRASE 1.9e-30 475-490
501-513
544-559
559-571
572-587
HMMPfam PF00160 Pro_isomerase 2.9e-51 464-612
ProfileScan PS50072 CSA_PPIASE_2 35.585 458-613
superfamily SSF50891 Cyclophilin-like 1e-68 460-613
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 7.6e-26 53-424
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.866 50-134
superfamily SSF50978 WD40 2.3e-29 51-360
IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site
Molecular Function GO:0003755 peptidyl-prolyl cis-trans isomerase activity    
Biological Process GO:0006457 protein folding    
PatternScan PS00170 CSA_PPIASE_1 NA 496-513
no_ID  
Gene3D G3DSA:2.40.100.10 no description 3.8e-73 459-613
HMMPanther PTHR11071 PEPTIDYL-PROLYL 8.4e-161 334-613
HMMPanther PTHR11071:SF35 PEPTIDYL-PROLYL 8.4e-161 334-613
Seg seg seg NA 15-30
Wolf-PSORT
Lj3g3v1145930.1	cyto 4, cysk 4, nucl 3, chlo 1, plas 1, golg 1, golg_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v1145930.1