Miyakogusa Predicted Gene

Lj3g3v1114700.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S6P0_LOTJA 198 92.5 92.5 (tr|I3S6P0) Histone H2B OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G07790.1 193 91.3 92.2 | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148
Medicago Medtr4g064020.1 198 91.5 92.5 | core histone H2A/H2B/H3/H4 | HC | chr4:23885563-23886484 | 20130731
Soybean Glyma10g34230.1 191 89.5 92.4  
LJGI gnl|LJGI|TC71812 551 100.0 100.0 homologue to UniRef100_Q9FFC0 Cluster: Histone H2B.10; n=2; Arabidopsis thaliana|Rep: Histone H2B.10 - Arabidopsis thaliana (Mouse-ear cress), partial (97%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v1114700.1 length: 142 aa.
IPR000558 Histone H2B
method AccNumber shortName E-value location
Cellular Component GO:0000786 nucleosome    
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006334 nucleosome assembly    
FPrintScan PR00621 HISTONEH2B 3e-49 55-73
74-94
96-113
113-126
126-139
HMMPanther PTHR23428 HISTONE 3.3e-109 1-142
HMMSmart SM00427 Histone 1.2e-73 45-141
PatternScan PS00357 HISTONE_H2B NA 110-132
IPR007125 Histone core
Molecular Function GO:0003677 DNA binding    
HMMPfam PF00125 Histone 2.3e-23 51-118
IPR009072 Histone-fold
Molecular Function GO:0046982 protein heterodimerization activity    
Gene3D G3DSA:1.10.20.10 no description 3.7e-56 25-142
superfamily SSF47113 Histone-fold 1.1e-48 36-142
no_ID  
Seg seg seg NA 2-36
43-50
Wolf-PSORT
Lj3g3v1114700.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v1114700.1