Miyakogusa Predicted Gene
- Lj3g3v1061310.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
M4ED40_BRARP |
313 |
100.0 |
100.0 |
(tr|M4ED40) Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra026700 PE=3 SV=1 |
| TAIR_pep |
AT1G16890.2 |
313 |
99.3 |
100.0 |
| Symbols: UBC36, UBC13B | ubiquitin-conjugating enzyme 36 | chr1:5776550-5778327 REVERSE LENGTH=153 |
| Medicago |
Medtr2g078010.1 |
308 |
97.4 |
100.0 |
| ubiquitin-conjugating enzyme | HC | chr2:32320407-32326653 | 20130731 |
| Soybean |
Glyma13g34600.1 |
313 |
98.7 |
100.0 |
|
| LJGI |
gnl|LJGI|TC58121 |
916 |
100.0 |
100.0 |
homologue to UniRef100_Q45W77 Cluster: Ubiquitin carrier protein; n=1; Arachis hypogaea|Rep: Ubiquitin carrier protein - Arachis hypogaea (Peanut), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v1061310.1 |
length: 153 aa. |
| IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016881 |
acid-amino acid ligase activity |
|
|
| HMMPfam |
PF00179 |
UQ_con |
1.5e-48 |
9-145 |
| ProfileScan |
PS50127 |
UBIQUITIN_CONJUGAT_2 |
42.046 |
8-140 |
| IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
| Gene3D |
G3DSA:3.10.110.10 |
no description |
1.8e-66 |
2-150 |
| superfamily |
SSF54495 |
UBC-like |
4.6e-56 |
3-152 |
| IPR023313 |
Ubiquitin-conjugating enzyme, active site |
| PatternScan |
PS00183 |
UBIQUITIN_CONJUGAT_1 |
NA |
78-93 |
| no_ID |
|
| HMMPanther |
PTHR24067 |
UBIQUITIN-CONJUGATING |
1.3e-98 |
1-150 |
| HMMPanther |
PTHR24067:SF31 |
UBIQUITIN-CONJUGATING |
1.3e-98 |
1-150 |
| HMMSmart |
SM00212 |
Ubiquitin-conjugating |
3.7e-68 |
8-151 |
- Wolf-PSORT
Lj3g3v1061310.1 mito 7, chlo 3, cyto 2, nucl 1, plas 1, nucl_plas 1, cyto_pero 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v1061310.1 |
Not targeted |
-38.911 |
-2.629 |
-1.305 |
50.83% |
-34.977
|