Miyakogusa Predicted Gene
- Lj3g3v0965630.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
M5X5T3_PRUPE |
248 |
88.7 |
94.0 |
(tr|M5X5T3) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002270mg PE=4 SV=1 |
| TAIR_pep |
AT5G45140.1 |
244 |
84.2 |
92.5 |
| Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161 |
| Medicago |
Medtr8g023445.1 |
249 |
88.0 |
94.7 |
| DNA-directed RNA polymerase | LC | chr8:8458667-8488921 | 20130731 |
| Soybean |
Glyma01g00980.1 |
245 |
86.5 |
93.2 |
|
| LJGI |
gnl|LJGI|TC67559 |
755 |
98.5 |
98.5 |
similar to UniRef100_A7QMF0 Cluster: DNA-directed RNA polymerase; n=4; core eudicotyledons|Rep: DNA-directed RNA polymerase - Vitis vinifera (Grape), partial (12%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v0965630.1 |
length: 134 aa. |
| IPR007120 |
DNA-directed RNA polymerase, subunit 2, domain 6 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| HMMPfam |
PF00562 |
RNA_pol_Rpb2_6 |
4e-14 |
1-38 |
| IPR007641 |
RNA polymerase Rpb2, domain 7 |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| HMMPfam |
PF04560 |
RNA_pol_Rpb2_7 |
9.6e-31 |
40-131 |
| IPR015712 |
DNA-directed RNA polymerase, subunit 2 |
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| Molecular Function |
GO:0032549 |
ribonucleoside binding |
|
|
| HMMPanther |
PTHR20856 |
DNA-DIRECTED |
3.8e-93 |
1-133 |
| no_ID |
|
| HMMPanther |
PTHR20856:SF8 |
DNA-DIRECTED |
3.8e-93 |
1-133 |
| superfamily |
SSF64484 |
beta |
6.4e-63 |
1-133 |
- Wolf-PSORT
Lj3g3v0965630.1 nucl 7, mito 2.5, cyto 2, cyto_mito 2, chlo 1, plas 1, cyto_pero 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v0965630.1 |
|