Miyakogusa Predicted Gene
- Lj3g3v0936580.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
A2Q3A8_MEDTR |
841 |
75.6 |
85.8 |
(tr|A2Q3A8) Putative uncharacterized protein OS=Medicago truncatula GN=MTR_2g062430 PE=4 SV=1 |
| TAIR_pep |
AT2G44260.1 |
644 |
59.4 |
73.7 |
| Symbols: | Plant protein of unknown function (DUF946) | chr2:18295988-18297739 FORWARD LENGTH=553 |
| Medicago |
Medtr2g062430.1 |
841 |
75.6 |
85.8 |
| DUF946 family protein | HC | chr2:26354832-26357000 | 20130731 |
| Soybean |
Glyma15g42160.1 |
815 |
68.9 |
79.8 |
|
| LJGI |
gnl|LJGI|TC72947 |
2807 |
99.7 |
99.7 |
weakly similar to UniRef100_A7QR76 Cluster: Chromosome chr13 scaffold_149, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_149, whole genome shotgun sequence - Vitis vinifera (Grape), partial (68%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v0936580.1 |
length: 582 aa. |
| IPR009291 |
Vacuolar protein sorting-associated protein 62 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF06101 |
DUF946 |
4.5e-251 |
48-582 |
| no_ID |
|
| HMMPanther |
PTHR17204 |
PRE-MRNA |
8.7e-240 |
37-582 |
| HMMPanther |
PTHR17204:SF7 |
PRE-MRNA |
8.7e-240 |
37-582 |
| Seg |
seg |
seg |
NA |
29-47 |
- Wolf-PSORT
Lj3g3v0936580.1 pero 4, chlo 3, nucl 3, cyto 1, vacu 1, E.R. 1, cysk 1, E.R._vacu 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v0936580.1 |
|