Miyakogusa Predicted Gene
- Lj3g3v0883710.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7L6V5_SOYBN |
288 |
48.8 |
62.0 |
(tr|K7L6V5) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G59550.1 |
86.3 |
55.3 |
70.6 |
| Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like family protein | chr3:21997262-22000496 FORWARD LENGTH=693 |
| Medicago |
Medtr3g005770.1 |
237 |
44.6 |
58.5 |
| sister chromatid cohesion 1 protein | HC | chr3:375395-369758 | 20130731 |
| Soybean |
Glyma08g16090.1 |
134 |
42.5 |
53.6 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v0883710.1 |
length: 347 aa. |
| IPR006909 |
Rad21/Rec8-like protein, C-terminal, eukaryotic |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0000228 |
nuclear chromosome |
|
|
| HMMPfam |
PF04824 |
Rad21_Rec8 |
1.6e-19 |
292-342 |
| IPR023093 |
Rad21/Rec8-like protein, C-terminal |
| Gene3D |
G3DSA:1.10.10.580 |
no description |
2.6e-16 |
268-344 |
| no_ID |
|
| HMMPanther |
PTHR12585 |
SCC1 |
7.7e-21 |
1-347 |
| HMMPanther |
PTHR12585:SF5 |
COHESIN |
7.7e-21 |
1-347 |
| Seg |
seg |
seg |
NA |
233-246 |
| superfamily |
SSF46785 |
"Winged |
2e-17 |
267-344 |
- Wolf-PSORT
Lj3g3v0883710.1 chlo 8, nucl 3.5, cyto_nucl 2.5, mito 1, plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v0883710.1 |
|