Miyakogusa Predicted Gene
- Lj3g3v0883700.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7L6V5_SOYBN |
386 |
52.7 |
60.4 |
(tr|K7L6V5) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G59550.1 |
216 |
37.3 |
50.6 |
| Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like family protein | chr3:21997262-22000496 FORWARD LENGTH=693 |
| Medicago |
Medtr3g005770.1 |
305 |
61.1 |
69.8 |
| sister chromatid cohesion 1 protein | HC | chr3:375395-369758 | 20130731 |
| Soybean |
Glyma08g16090.1 |
211 |
75.6 |
82.2 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v0883700.1 |
length: 439 aa. |
| IPR006910 |
Rad21/Rec8-like protein, N-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF04825 |
Rad21_Rec8_N |
7.7e-39 |
1-111 |
| no_ID |
|
| HMMPanther |
PTHR12585 |
SCC1 |
1.1e-61 |
2-439 |
| HMMPanther |
PTHR12585:SF5 |
COHESIN |
1.1e-61 |
2-439 |
| Seg |
seg |
seg |
NA |
411-422 |
- Wolf-PSORT
Lj3g3v0883700.1 chlo 10, nucl 2, mito 1, pero 1, cyto_nucl 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v0883700.1 |
|