Miyakogusa Predicted Gene

Lj3g3v0883690.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9HNK5_POPTR 315 83.4 92.3 (tr|B9HNK5) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1087747 PE=4 SV=1
TAIR_pep AT3G52150.2 280 73.1 88.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19342074-19343090 FORWARD LENGTH=253
Medicago Medtr3g027140.1 306 82.9 87.2 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr3:8413608-8404220 | 20130731
Soybean Glyma08g16100.1 322 87.0 94.9  
LJGI gnl|LJGI|TC72983 1439 100.0 100.0 similar to UniRef100_A7QWX5 Cluster: Chromosome chr13 scaffold_210, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_210, whole genome shotgun sequence - Vitis vinifera (Grape), partial (77%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0883690.1 length: 240 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.1e-19 66-136
166-236
HMMSmart SM00360 RNA 9.5e-24 65-138
165-238
ProfileScan PS50102 RRM 18.547 64-142
164-240
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 7.7e-24 48-140
153-240
no_ID  
HMMPanther PTHR24012 FAMILY 6.6e-79 59-240
HMMPanther PTHR24012:SF151SUBFAMILY NOT 6.6e-79 59-240
Seg seg seg NA 8-28
30-52
superfamily SSF54928 RNA-binding 1e-22 23-160
157-240
Wolf-PSORT
Lj3g3v0883690.1	chlo 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0883690.1