Miyakogusa Predicted Gene

Lj3g3v0850570.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IWL8_MEDTR 543 80.2 86.5 (tr|G7IWL8) E3 ubiquitin-protein ligase makorin OS=Medicago truncatula GN=MTR_3g028190 PE=4 SV=1
TAIR_pep AT3G08505.1 402 62.3 72.6 | Symbols: | zinc finger (CCCH-type/C3HC4-type RING finger) family protein | chr3:2580603-2582043 REVERSE LENGTH=323
Medicago Medtr3g028190.1 540 80.2 86.5 | makorin RING-zinc-finger protein | HC | chr3:8931474-8934895 | 20130731
Soybean Glyma15g42750.1 534 80.6 85.5  
LJGI gnl|LJGI|TC62424 1403 100.0 100.0 similar to UniRef100_A9T2C7 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (46%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0850570.1 length: 318 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00642 zf-CCCH 1.7e-06 34-54
HMMSmart SM00356 zinc 19 1-27
30-55
138-163
293-317
ProfileScan PS50103 ZF_C3H1 11.347 1-28
29-56
137-164
293-318
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 1.7e-08 205-265
HMMSmart SM00184 Ring 3.4e-07 206-263
ProfileScan PS50089 ZF_RING_2 12.238 206-264
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.9e-09 199-265
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 230-239
IPR026290 Putative E3 ubiquitin-protein ligase, makorin-related
HMMPanther PTHR11224 MAKORIN-RELATED 1.1e-167 2-318
no_ID  
HMMPanther PTHR11224:SF10 MAKORIN 1.1e-167 2-318
Seg seg seg NA 56-67
superfamily SSF57850 RING/U-box 8.6e-13 171-270
superfamily SSF90229 CCCH 0.00028 3-26
27-55
135-163
Wolf-PSORT
Lj3g3v0850570.1	nucl 9, mito 3, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0850570.1