Miyakogusa Predicted Gene

Lj3g3v0826110.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MJQ7_SOYBN 1429 83.4 89.8 (tr|I1MJQ7) DNA topoisomerase 2 OS=Glycine max PE=3 SV=2
TAIR_pep AT3G23890.1 978 63.2 76.8 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1473
Medicago Medtr3g031040.1 1354 79.1 86.4 | DNA topoisomerase IV subunit A | HC | chr3:9877949-9869222 | 20130731
Soybean Glyma15g43170.1 1410 82.7 89.0  
LJGI gnl|LJGI|CN824974 1364 99.0 99.0 similar to UniRef100_O24308 Cluster: DNA topoisomerase 2; n=2; Pisum sativum|Rep: DNA topoisomerase 2 - Pisum sativum (Garden pea), partial (16%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0826110.1 length: 857 aa.
IPR001154 DNA topoisomerase II, eukaryotic-type
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
FPrintScan PR01158 TOPISMRASEII 4.2e-87 50-60
65-72
113-126
156-171
177-188
226-238
339-362
386-408
416-436
522-536
606-632
IPR001241 DNA topoisomerase, type IIA
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006265 DNA topological change    
FPrintScan PR00418 TPI2FAMILY 3.4e-27 67-81
137-153
155-172
176-188
220-236
HMMSmart SM00433 TopoisomeraseII 1.9e-18 1-280
IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006265 DNA topological change    
HMMPfam PF00521 DNA_topoisoIV 1.2e-126 311-773
HMMSmart SM00434 DNA 2.3e-211 291-770
IPR006171 Toprim domain
HMMPfam PF01751 Toprim 8.9e-11 66-177
IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:1.10.268.10 no description 4.5e-47 613-788
IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006259 DNA metabolic process    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:3.90.199.10 no description 4.4e-64 313-493
IPR013759 DNA topoisomerase, type IIA, central domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:3.40.50.670 no description 1.6e-59 35-204
IPR013760 DNA topoisomerase, type IIA-like domain
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
superfamily SSF56719 Type 4.6e-258 41-791
IPR018522 DNA topoisomerase, type IIA, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006265 DNA topological change    
PatternScan PS00177 TOPOISOMERASE_II NA 69-77
IPR024946 Arginine repressor C-terminal-like domain
Gene3D G3DSA:3.30.1360.40 no description 5.9e-26 494-597
no_ID  
Coil coil coiled-coil NA 742-763
765-793
Gene3D G3DSA:3.30.1490.30 no description 4.1e-20 205-238
HMMPanther PTHR10169 DNA 0 3-839
HMMPanther PTHR10169:SF19 DNA 0 3-839
Seg seg seg NA 699-721
744-760
770-781
Wolf-PSORT
Lj3g3v0826110.1	nucl 5, cyto 5, cyto_nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0826110.1