Miyakogusa Predicted Gene

Lj3g3v0821140.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J1P0_MEDTR 1178 79.6 87.4 (tr|G7J1P0) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_3g023180 PE=4 SV=1
TAIR_pep AT4G20740.1 881 59.7 76.6 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:11126151-11128334 FORWARD LENGTH=727
Medicago Medtr3g023180.1 1181 79.6 87.4 | PPR containing plant-like protein | HC | chr3:7000866-7006661 | 20130731
Soybean Glyma06g35950.1 1046 71.7 80.5  
LJGI gnl|LJGI|BW612204 220 99.1 99.1 similar to UniRef100_Q77IW3 Cluster: ORF91; n=3; Nucleopolyhedrovirus|Rep: ORF91 - Helicoverpa zea SNPV, partial (30%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0821140.1 length: 731 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0083 235-264
269-297
410-434
583-605
653-682
HMMPfam PF13041 PPR_2 9.9e-09 301-349
513-553
HMMPfam PF13812 PPR_3 0.069 627-650
HMMTigr TIGR00756 PPR: 0.00083 235-264
269-303
305-338
340-372
410-442
513-545
628-650
653-683
ProfileScan PS51375 PPR 8.254 161-195
232-266
196-226
267-301
302-336
337-371
407-441
372-406
442-476
510-544
545-579
580-610
651-685
616-650
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.9e-07 512-605
no_ID  
HMMPanther PTHR24015 FAMILY 2.7e-112 66-710
HMMPanther PTHR24015:SF0 SUBFAMILY 2.7e-112 66-710
Seg seg seg NA 2-11
55-64
76-97
superfamily SSF48452 TPR-like 0.0086 265-436
superfamily SSF81901 HCP-like 2.3e-07 352-576
Wolf-PSORT
Lj3g3v0821140.1	chlo 12, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0821140.1