Miyakogusa Predicted Gene

Lj3g3v0807570.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SQI4_LOTJA 1022 92.8 93.5 (tr|I3SQI4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT3G21060.1 720 70.0 79.9 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:7377822-7379942 FORWARD LENGTH=547
Medicago Medtr8g041740.1 835 75.0 83.5 | retinoblastoma-binding-like protein | HC | chr8:15732435-15736980 | 20130731
Soybean Glyma13g18540.1 923 83.1 88.7  
LJGI gnl|LJGI|GO015342 1445 99.6 99.6 similar to UniRef100_A7PK88 Cluster: Chromosome chr15 scaffold_19, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_19, whole genome shotgun sequence - Vitis vinifera (Grape), partial (43%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0807570.1 length: 540 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.018 28-51
64-95
217-243
328-363
HMMSmart SM00320 WD40 0.0028 13-51
54-95
203-244
276-323
325-364
ProfileScan PS50082 WD_REPEATS_2 10.442 63-104
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.1e-40 163-412
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 13.791 19-104
superfamily SSF50978 WD40 2e-41 23-364
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 38-52
no_ID  
HMMPanther PTHR12816 RETINOBLASTOMA 2.5e-257 1-535
HMMPanther PTHR12816:SF9 RETINOBLASTOMA 2.5e-257 1-535
Seg seg seg NA 380-393
513-532
Wolf-PSORT
Lj3g3v0807570.1	nucl 10.5, cyto_nucl 6.5, cyto 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0807570.1