Miyakogusa Predicted Gene

Lj3g3v0797440.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KFM8_SOYBN 966 87.1 92.9 (tr|I1KFM8) Pectinesterase OS=Glycine max PE=3 SV=2

TAIR_pep AT5G04970.1 716 64.5 77.7 | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:1464262-1467001 REVERSE LENGTH=624

Medicago Medtr3g010770.1 933 83.8 90.6 | pectinesterase/pectinesterase inhibitor | HC | chr3:2571521-2576859 | 20130731

Soybean Glyma06g47200.1 966 87.1 92.9

LJGI gnl|LJGI|TC58862 1992 100.0 100.0 weakly similar to UniRef100_Q93Z62 Cluster: At2g47550/T30B22.15; n=1; Arabidopsis thaliana|Rep: At2g47550/T30B22.15 - Arabidopsis thaliana (Mouse-ear cress), partial (24%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0797440.1 length: 576 aa.

IPR000070 Pectinesterase, catalytic

method AccNumber shortName E-value location

Cellular Component GO:0005618 cell wall

Molecular Function GO:0030599 pectinesterase activity

Biological Process GO:0042545 cell wall modification

HMMPfam PF01095 Pectinesterase 7.7e-136 266-559

IPR006501 Pectinesterase inhibitor

Molecular Function GO:0004857 enzyme inhibitor activity

Molecular Function GO:0030599 pectinesterase activity

Gene3D G3DSA:1.20.140.40 no description 5.6e-21 38-194

HMMPfam PF04043 PMEI 2.6e-25 31-190

HMMSmart SM00856 Plant 1.8e-25 31-191

HMMTigr TIGR01614 PME_inhib: 2e-14 6-194

superfamily SSF101148 Plant 3.5e-22 33-198

IPR011050 Pectin lyase fold/virulence factor

superfamily SSF51126 Pectin 2.5e-106 253-574

IPR012334 Pectin lyase fold

Gene3D G3DSA:2.160.20.10 no description 1.2e-114 261-572

IPR018040 Pectinesterase, active site

PatternScan PS00503 PECTINESTERASE_2 NA 408-417

no_ID

HMMPanther PTHR31707 FAMILY 4.8e-244 37-576

HMMPanther PTHR31707:SF0 SUBFAMILY 4.8e-244 37-576

Seg seg seg NA 2-39
94-99

Wolf-PSORT

Lj3g3v0797440.1 chlo 11, nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0797440.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KFM8_SOYBN	966	87.1	92.9	(tr\|I1KFM8) Pectinesterase OS=Glycine max PE=3 SV=2
TAIR_pep	AT5G04970.1	716	64.5	77.7	\| Symbols: \| Plant invertase/pectin methylesterase inhibitor superfamily \| chr5:1464262-1467001 REVERSE LENGTH=624
Medicago	Medtr3g010770.1	933	83.8	90.6	\| pectinesterase/pectinesterase inhibitor \| HC \| chr3:2571521-2576859 \| 20130731
Soybean	Glyma06g47200.1	966	87.1	92.9
LJGI	gnl\|LJGI\|TC58862	1992	100.0	100.0	weakly similar to UniRef100_Q93Z62 Cluster: At2g47550/T30B22.15; n=1; Arabidopsis thaliana\|Rep: At2g47550/T30B22.15 - Arabidopsis thaliana (Mouse-ear cress), partial (24%)

IPR000070	Pectinesterase, catalytic
Lj3g3v0797440.1				length: 576 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005618	cell wall
Molecular Function	GO:0030599	pectinesterase activity
Biological Process	GO:0042545	cell wall modification
HMMPfam	PF01095	Pectinesterase	7.7e-136	266-559
IPR006501	Pectinesterase inhibitor
Molecular Function	GO:0004857	enzyme inhibitor activity
Molecular Function	GO:0030599	pectinesterase activity
Gene3D	G3DSA:1.20.140.40	no description	5.6e-21	38-194
HMMPfam	PF04043	PMEI	2.6e-25	31-190
HMMSmart	SM00856	Plant	1.8e-25	31-191
HMMTigr	TIGR01614	PME_inhib:	2e-14	6-194
superfamily	SSF101148	Plant	3.5e-22	33-198
IPR011050	Pectin lyase fold/virulence factor
superfamily	SSF51126	Pectin	2.5e-106	253-574
IPR012334	Pectin lyase fold
Gene3D	G3DSA:2.160.20.10	no description	1.2e-114	261-572
IPR018040	Pectinesterase, active site
PatternScan	PS00503	PECTINESTERASE_2	NA	408-417
no_ID
HMMPanther	PTHR31707	FAMILY	4.8e-244	37-576
HMMPanther	PTHR31707:SF0	SUBFAMILY	4.8e-244	37-576
Seg	seg	seg	NA	2-39 94-99