Miyakogusa Predicted Gene

Lj3g3v0766090.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KPR4_MEDTR 594 65.4 83.4 (tr|G7KPR4) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_6g069300 PE=4 SV=1
TAIR_pep AT1G12775.1 369 38.5 61.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4353906-4355840 FORWARD LENGTH=644
Medicago Medtr0110s0060.1 608 66.1 83.9 | pentatricopeptide (PPR) repeat protein | HC | scaffold0110:45179-40986 | 20130731
Soybean Glyma09g30530.1 590 64.9 82.4  
LJGI gnl|LJGI|FS342564 1150 100.0 100.0 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0766090.1 length: 446 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 7.1e-11 110-140
216-246
250-281
HMMPfam PF13041 PPR_2 1.4e-14 43-91
148-196
289-337
359-407
HMMTigr TIGR00756 PPR: 1.6e-06 46-80
81-114
116-142
151-185
186-219
221-255
256-281
292-325
326-359
361-394
396-429
ProfileScan PS51375 PPR 11.783 9-43
44-78
79-113
114-148
149-183
184-218
219-253
254-288
289-323
324-358
359-393
394-428
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00011 221-386
no_ID  
HMMPanther PTHR24015 FAMILY 2.8e-150 1-433
HMMPanther PTHR24015:SF0 SUBFAMILY 2.8e-150 1-433
superfamily SSF48452 TPR-like 0.0029 324-422
44-141
Wolf-PSORT
Lj3g3v0766090.1	chlo 8, nucl 2, cyto 1, vacu 1, E.R. 1, pero 1, cysk_nucl 1, nucl_plas 1, E.R._vacu 1, cyto_pero 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0766090.1