Miyakogusa Predicted Gene

Lj3g3v0708190.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7ZZA7_MEDTR 209 63.0 66.8 (tr|G7ZZA7) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (Fragment) OS=Medicago truncatula GN=MTR_085s0009 PE=1 SV=1

TAIR_pep AT3G25860.1 193 59.4 64.7 | Symbols: LTA2, PLE2 | 2-oxoacid dehydrogenases acyltransferase family protein | chr3:9460632-9462585 FORWARD LENGTH=480

Medicago Medtr1g111140.1 209 63.0 66.8 | 2-oxoacid dehydrogenase acyltransferase family protein | HC | chr1:50194256-50200333 | 20130731

Soybean Glyma01g20720.1 207 68.0 70.9

LJGI gnl|LJGI|TC60139 1306 99.4 99.4 similar to UniRef100_A9TQT5 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (32%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0708190.1 length: 266 aa.

IPR000089 Biotin/lipoyl attachment

method AccNumber shortName E-value location

HMMPfam PF00364 Biotin_lipoyl 9.5e-15 56-126

ProfileScan PS50968 BIOTINYL_LIPOYL 13.487 55-128

IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site

PatternScan PS00189 LIPOYL NA 79-108

IPR004167 E3 binding

Biological Process GO:0008152 metabolic process

Molecular Function GO:0016746 transferase activity, transferring acyl groups

Gene3D G3DSA:4.10.320.10 no description 1.9e-15 170-214

HMMPfam PF02817 E3_binding 3.1e-14 175-212

superfamily SSF47005 Peripheral 1.2e-11 167-215

IPR011053 Single hybrid motif

superfamily SSF51230 Single 1.3e-24 50-150

no_ID

Coil coil coiled-coil NA 128-149

Gene3D G3DSA:2.40.50.100 no description 2.5e-28 51-148

HMMPanther PTHR23151 DIHYDROLIPOAMIDE 5.9e-84 24-234

HMMPanther PTHR23151:SF31 SUBFAMILY 5.9e-84 24-234

Seg seg seg NA 8-38
132-170
218-229

Wolf-PSORT

Lj3g3v0708190.1 chlo 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0708190.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7ZZA7_MEDTR	209	63.0	66.8	(tr\|G7ZZA7) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (Fragment) OS=Medicago truncatula GN=MTR_085s0009 PE=1 SV=1
TAIR_pep	AT3G25860.1	193	59.4	64.7	\| Symbols: LTA2, PLE2 \| 2-oxoacid dehydrogenases acyltransferase family protein \| chr3:9460632-9462585 FORWARD LENGTH=480
Medicago	Medtr1g111140.1	209	63.0	66.8	\| 2-oxoacid dehydrogenase acyltransferase family protein \| HC \| chr1:50194256-50200333 \| 20130731
Soybean	Glyma01g20720.1	207	68.0	70.9
LJGI	gnl\|LJGI\|TC60139	1306	99.4	99.4	similar to UniRef100_A9TQT5 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens\|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (32%)

IPR000089	Biotin/lipoyl attachment
Lj3g3v0708190.1				length: 266 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF00364	Biotin_lipoyl	9.5e-15	56-126
ProfileScan	PS50968	BIOTINYL_LIPOYL	13.487	55-128
IPR003016	2-oxo acid dehydrogenase, lipoyl-binding site
PatternScan	PS00189	LIPOYL	NA	79-108
IPR004167	E3 binding
Biological Process	GO:0008152	metabolic process
Molecular Function	GO:0016746	transferase activity, transferring acyl groups
Gene3D	G3DSA:4.10.320.10	no description	1.9e-15	170-214
HMMPfam	PF02817	E3_binding	3.1e-14	175-212
superfamily	SSF47005	Peripheral	1.2e-11	167-215
IPR011053	Single hybrid motif
superfamily	SSF51230	Single	1.3e-24	50-150
no_ID
Coil	coil	coiled-coil	NA	128-149
Gene3D	G3DSA:2.40.50.100	no description	2.5e-28	51-148
HMMPanther	PTHR23151	DIHYDROLIPOAMIDE	5.9e-84	24-234
HMMPanther	PTHR23151:SF31	SUBFAMILY	5.9e-84	24-234
Seg	seg	seg	NA	8-38 132-170 218-229