Miyakogusa Predicted Gene

Lj3g3v0707070.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KWV7_SOYBN 531 73.2 76.8 (tr|I1KWV7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G02540.1 382 75.8 82.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repair protein family | chr3:533095-536151 REVERSE LENGTH=419
Medicago Medtr1g111090.1 494 69.5 74.9 | RAD23 UV excision repair family protein | HC | chr1:50171474-50175986 | 20130731
Soybean Glyma08g32090.3 531 73.2 76.8  
LJGI gnl|LJGI|TC66052 2210 99.6 99.6 similar to UniRef100_A7P372 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (89%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0707070.1 length: 387 aa.
IPR000449 Ubiquitin-associated/translation elongation factor EF1B, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00627 UBA 2.6e-09 158-195
343-377
IPR000626 Ubiquitin
Molecular Function GO:0005515 protein binding    
HMMPfam PF00240 ubiquitin 1.5e-12 10-65
HMMSmart SM00213 Ubiquitin 0.00026 1-63
IPR004806 UV excision repair protein Rad23
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006289 nucleotide-excision repair    
FPrintScan PR01839 RAD23PROTEIN 1.8e-33 286-308
336-352
353-367
368-383
HMMTigr TIGR00601 rad23: 8.8e-107 9-385
IPR006636 Heat shock chaperonin-binding
HMMSmart SM00727 Heat 5.2e-05 258-301
IPR009060 UBA-like
Molecular Function GO:0005515 protein binding    
superfamily SSF46934 UBA-like 5.2e-12 314-386
154-218
IPR015360 XPC-binding domain
Molecular Function GO:0003684 damaged DNA binding    
Biological Process GO:0006289 nucleotide-excision repair    
Biological Process GO:0043161 proteasomal ubiquitin-dependent protein catabolic process    
Gene3D G3DSA:1.10.10.540 no description 9.9e-29 256-322
HMMPfam PF09280 XPC-binding 2.4e-21 260-317
superfamily SSF101238 XPC-binding 3.6e-20 255-326
IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
HMMSmart SM00165 Ubiquitin 1.7e-08 157-197
342-379
ProfileScan PS50030 UBA 14.547 152-198
339-380
IPR019955 Ubiquitin supergroup
ProfileScan PS50053 UBIQUITIN_2 13.054 11-67
no_ID  
Gene3D G3DSA:1.10.8.10 no description 7.3e-25 150-201
339-384
Gene3D G3DSA:3.10.20.90 no description 1.7e-10 10-66
HMMPanther PTHR10621 UV 9.2e-146 8-387
HMMPanther PTHR10621:SF0 UV 9.2e-146 8-387
Seg seg seg NA 83-105
109-131
212-231
superfamily SSF54236 Ubiquitin-like 9.8e-12 9-64
Wolf-PSORT
Lj3g3v0707070.1	cyto 7, mito 3, chlo 2, mito_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0707070.1