Miyakogusa Predicted Gene
- Lj3g3v0669220.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SIK9_LOTJA |
710 |
100.0 |
100.0 |
(tr|I3SIK9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G54370.1 |
432 |
59.4 |
74.3 |
| Symbols: | Late embryogenesis abundant (LEA) protein-related | chr5:22075334-22076567 FORWARD LENGTH=337 |
| Medicago |
Medtr2g080230.1 |
565 |
79.8 |
87.7 |
| root cap/late embryogenesis related | HC | chr2:33875585-33873975 | 20130731 |
| Soybean |
Glyma06g38530.1 |
527 |
75.4 |
84.8 |
|
| LJGI |
gnl|LJGI|TC74339 |
2028 |
100.0 |
100.0 |
similar to UniRef100_A7P1G9 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (88%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v0669220.2 |
length: 340 aa. |
| IPR009646 |
Root cap |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF06830 |
Root_cap |
4.7e-26 |
250-306 |
| no_ID |
|
| HMMPanther |
PTHR31656 |
FAMILY |
1.3e-165 |
32-340 |
| HMMPanther |
PTHR31656:SF0 |
SUBFAMILY |
1.3e-165 |
32-340 |
- Wolf-PSORT
Lj3g3v0669220.2 chlo 7, nucl 2, extr 2, cyto 1, vacu 1, E.R. 1, cysk_nucl 1, nucl_plas 1, E.R._vacu 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v0669220.2 |
|