Miyakogusa Predicted Gene

Lj3g3v0664850.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M2D5_SOYBN 1011 75.3 79.9 (tr|K7M2D5) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
TAIR_pep AT5G54200.1 781 60.5 70.0 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:21993565-21997076 REVERSE LENGTH=825
Medicago Medtr2g079740.1 1071 79.1 81.9 | transducin/WD-like repeat-protein | HC | chr2:33593874-33587864 | 20130731
Soybean Glyma12g35040.1 998 74.5 79.1  
LJGI gnl|LJGI|AU089265 609 98.7 98.7 weakly similar to UniRef100_A7P1I9 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0664850.1 length: 849 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.1e-06 358-391
470-506
516-548
HMMSmart SM00320 WD40 0.47 353-392
468-506
509-548
551-589
602-641
642-683
ProfileScan PS50082 WD_REPEATS_2 12.580 360-401
475-515
515-549
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 6.3e-61 465-685
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 16.717 360-401
475-692
superfamily SSF50978 WD40 5.3e-54 356-683
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 3.6e-05 379-393
493-507
535-549
no_ID  
HMMPanther PTHR14221 WD 5.8e-230 1-849
HMMPanther PTHR14221:SF0 SUBFAMILY 5.8e-230 1-849
Seg seg seg NA 24-38
46-56
117-161
165-173
247-286
303-315
440-452
485-497
606-614
Wolf-PSORT
Lj3g3v0664850.1	nucl 11, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0664850.1