Miyakogusa Predicted Gene

Lj3g3v0618270.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL I1JMH7_SOYBN 2612 83.8 89.5 (tr|I1JMH7) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT3G60160.1 1862 60.4 74.4 | Symbols: ATMRP9, MRP9, ABCC9 | multidrug resistance-associated protein 9 | chr3:22223829-22229195 REVERSE LENGTH=1506
Medicago Medtr5g094830.1 1385 52.8 69.5 | multidrug resistance protein ABC transporter family protein | HC | chr5:41454197-41447535 | 20130731
Soybean Glyma03g24300.2 2612 83.8 89.5  
LJGI gnl|LJGI|GO009083 1181 99.8 99.8 similar to UniRef100_A7PK05 Cluster: Chromosome chr15 scaffold_19, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_19, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0618270.1 length: 1518 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 2.6e-27 319-584
951-1197
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 1.2e-18 673-783
1304-1428
ProfileScan PS50893 ABC_TRANSPORTER_2 16.860 631-854
1265-1497
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 6.9e-13 658-831
1289-1474
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 9.7e-40 917-1245
290-642
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 756-770
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 33.181 319-597
946-1226
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.5e-48 1242-1483
631-840
no_ID  
Coil coil coiled-coil NA 478-499
Gene3D G3DSA:1.20.1560.10 no description 2.6e-53 313-612
946-1250
Gene3D G3DSA:3.40.50.300 no description 1.5e-62 634-858
1264-1504
HMMPanther PTHR24223 FAMILY 0 52-1506
HMMPanther PTHR24223:SF106GTP BINDING 0 52-1506
Seg seg seg NA 315-329
378-390
453-470
669-681
Wolf-PSORT
Lj3g3v0618270.1	plas 5, cyto 4, chlo 3, nucl_plas 3, cysk_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0618270.1