Miyakogusa Predicted Gene

Lj3g3v0489490.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G8A1T4_MEDTR 700 74.4 82.4 (tr|G8A1T4) Ferric reductase defective 3a (Fragment) OS=Medicago truncatula GN=MTR_125s0009 PE=4 SV=1

TAIR_pep AT3G08040.2 521 59.2 71.5 | Symbols: FRD3, MAN1, ATFRD3 | MATE efflux family protein | chr3:2566593-2569397 REVERSE LENGTH=526

Medicago Medtr8g037175.1 698 74.4 82.4 | MATE efflux family protein | HC | chr8:13746731-13752732 | 20130731

Soybean Glyma09g15550.1 670 70.3 79.8

LJGI gnl|LJGI|GO024330 268 87.1 87.1 similar to UniRef100_A7Q2A7 Cluster: Chromosome chr13 scaffold_45, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_45, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0489490.1 length: 525 aa.

IPR002528 Multi antimicrobial extrusion protein

method AccNumber shortName E-value location

Biological Process GO:0006855 drug transmembrane transport

Molecular Function GO:0015238 drug transmembrane transporter activity

Molecular Function GO:0015297 antiporter activity

Cellular Component GO:0016020 membrane

Biological Process GO:0055085 transmembrane transport

HMMPfam PF01554 MatE 6.1e-13 192-291
352-495

HMMTigr TIGR00797 matE: 5.8e-107 46-495

no_ID

Coil coil coiled-coil NA 114-135

HMMPanther PTHR11206 MULTIDRUG 7.6e-161 23-496

HMMPanther PTHR11206:SF47 MATE 7.6e-161 23-496

Seg seg seg NA 176-186

Wolf-PSORT

Lj3g3v0489490.1 plas 12, golg 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0489490.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G8A1T4_MEDTR	700	74.4	82.4	(tr\|G8A1T4) Ferric reductase defective 3a (Fragment) OS=Medicago truncatula GN=MTR_125s0009 PE=4 SV=1
TAIR_pep	AT3G08040.2	521	59.2	71.5	\| Symbols: FRD3, MAN1, ATFRD3 \| MATE efflux family protein \| chr3:2566593-2569397 REVERSE LENGTH=526
Medicago	Medtr8g037175.1	698	74.4	82.4	\| MATE efflux family protein \| HC \| chr8:13746731-13752732 \| 20130731
Soybean	Glyma09g15550.1	670	70.3	79.8
LJGI	gnl\|LJGI\|GO024330	268	87.1	87.1	similar to UniRef100_A7Q2A7 Cluster: Chromosome chr13 scaffold_45, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr13 scaffold_45, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%)

IPR002528	Multi antimicrobial extrusion protein
Lj3g3v0489490.1				length: 525 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0006855	drug transmembrane transport
Molecular Function	GO:0015238	drug transmembrane transporter activity
Molecular Function	GO:0015297	antiporter activity
Cellular Component	GO:0016020	membrane
Biological Process	GO:0055085	transmembrane transport
HMMPfam	PF01554	MatE	6.1e-13	192-291 352-495
HMMTigr	TIGR00797	matE:	5.8e-107	46-495
no_ID
Coil	coil	coiled-coil	NA	114-135
HMMPanther	PTHR11206	MULTIDRUG	7.6e-161	23-496
HMMPanther	PTHR11206:SF47	MATE	7.6e-161	23-496
Seg	seg	seg	NA	176-186