Miyakogusa Predicted Gene

Lj3g3v0478110.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KTK9_SOYBN 616 75.2 81.4 (tr|I1KTK9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G52120.1 489 60.0 71.9 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein | chr3:19329243-19331738 FORWARD LENGTH=443
Medicago Medtr8g036890.1 619 75.1 80.8 | suppressor-of-white-APricot splicing regulator | HC | chr8:13445831-13440568 | 20130731
Soybean Glyma08g16200.1 616 75.2 81.4  
LJGI gnl|LJGI|TC58661 1437 99.1 99.1 similar to UniRef100_A7QWV9 Cluster: Chromosome chr13 scaffold_210, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_210, whole genome shotgun sequence - Vitis vinifera (Grape), partial (51%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0478110.2 length: 433 aa.
IPR000061 SWAP/Surp
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0006396 RNA processing    
HMMPfam PF01805 Surp 2.2e-15 139-189
HMMSmart SM00648 Suppressor-of-White-APricot 3.9e-15 139-193
ProfileScan PS50128 SURP 13.310 141-184
superfamily SSF109905 Surp 2.2e-15 112-199
IPR000467 G-patch domain
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF01585 G-patch 6.7e-14 351-394
HMMSmart SM00443 glycine 6.3e-15 348-395
ProfileScan PS50174 G_PATCH 16.802 350-397
no_ID  
HMMPanther PTHR23340 ARGININE/SERINE 9.9e-89 70-433
HMMPanther PTHR23340:SF0 SUBFAMILY 9.9e-89 70-433
Seg seg seg NA 250-273
Wolf-PSORT
Lj3g3v0478110.2	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0478110.2