Miyakogusa Predicted Gene

Lj3g3v0478030.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T0J2_LOTJA 468 99.6 100.0 (tr|I3T0J2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G47960.1 273 60.2 79.2 | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homolog A4C | chr5:19421533-19422473 REVERSE LENGTH=223
Medicago Medtr8g036220.1 394 82.5 90.4 | RAB GTPase-like protein A1D | HC | chr8:13393739-13391340 | 20130731
Soybean Glyma12g36760.1 404 82.5 92.1  
LJGI gnl|LJGI|TC69578 1348 99.9 99.9 similar to UniRef100_A7QWW2 Cluster: Chromosome chr13 scaffold_210, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_210, whole genome shotgun sequence - Vitis vinifera (Grape), partial (73%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0478030.1 length: 227 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 5.6e-40 16-37
39-55
57-79
118-131
153-175
HMMPfam PF00071 Ras 1.8e-61 17-176
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 1.1e-10 21-221
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 7.2e-12 18-174
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 3.5e-99 16-178
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 4e-35 14-168
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 1.1e-29 16-178
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.3e-65 11-214
no_ID  
Coil coil coiled-coil NA 200-221
Gene3D G3DSA:3.40.50.300 no description 7.1e-70 9-224
HMMPanther PTHR24073 FAMILY 5.8e-105 3-225
HMMPanther PTHR24073:SF87 SUBFAMILY 5.8e-105 3-225
ProfileScan PS51419 RAB 33.956 11-224
Wolf-PSORT
Lj3g3v0478030.1	chlo 6, cyto 6, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0478030.1