Miyakogusa Predicted Gene
- Lj3g3v0424250.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7IYP6_MEDTR |
108 |
40.1 |
63.1 |
(tr|G7IYP6) F-box/kelch-repeat protein OS=Medicago truncatula GN=MTR_3g013950 PE=4 SV=1 |
| TAIR_pep |
AT1G31080.1 |
50.8 |
39.2 |
57.0 |
| Symbols: | F-box family protein | chr1:11091832-11092899 FORWARD LENGTH=355 |
| Medicago |
Medtr7g056820.1 |
111 |
44.4 |
62.5 |
| F-box protein interaction domain protein | LC | chr7:20477843-20475754 | 20130731 |
| Soybean |
Glyma08g46490.1 |
99.4 |
35.1 |
58.3 |
|
| LJGI |
gnl|LJGI|TC66505 |
791 |
98.6 |
98.6 |
similar to UniRef100_Q2HS67 Cluster: Cyclin-like F-box; F-box protein interaction domain; n=1; Medicago truncatula|Rep: Cyclin-like F-box; F-box protein interaction domain - Medicago truncatula (Barrel medic), partial (17%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v0424250.1 |
length: 226 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
3.8e-08 |
9-42 |
| HMMSmart |
SM00256 |
A |
3.1e-07 |
8-48 |
| ProfileScan |
PS50181 |
FBOX |
11.511 |
2-48 |
| superfamily |
SSF81383 |
F-box |
7e-11 |
5-42 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
6.8e-10 |
8-42 |
- Wolf-PSORT
Lj3g3v0424250.1 chlo 4, extr 4, nucl 2, cyto 1, mito 1, vacu 1, E.R. 1, cysk_nucl 1, nucl_plas 1, E.R._vacu 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v0424250.1 |
Not targeted |
-36.239 |
-0.092 |
-3.545 |
44.57% |
-32.602
|