Miyakogusa Predicted Gene

Lj3g3v0422710.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1MI58_SOYBN 384 85.7 91.5 (tr|I1MI58) Uncharacterized protein OS=Glycine max PE=3 SV=1

TAIR_pep AT1G79050.2 323 74.6 80.3 | Symbols: | recA DNA recombination family protein | chr1:29737364-29740140 REVERSE LENGTH=343

Medicago Medtr8g461220.1 358 82.5 86.0 | DNA repair and recombination protein | HC | chr8:21510596-21499546 | 20130731

Soybean Glyma15g27640.1 384 85.7 91.5

LJGI gnl|LJGI|TC59902 1417 100.0 100.0 homologue to UniRef100_A8MQK1 Cluster: Uncharacterized protein At1g79050.2; n=1; Arabidopsis thaliana|Rep: Uncharacterized protein At1g79050.2 - Arabidopsis thaliana (Mouse-ear cress), partial (50%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0422710.1 length: 253 aa.

IPR013765 DNA recombination and repair protein RecA

method AccNumber shortName E-value location

Molecular Function GO:0003697 single-stranded DNA binding

Molecular Function GO:0005524 ATP binding

Biological Process GO:0006281 DNA repair

Biological Process GO:0009432 SOS response

FPrintScan PR00142 RECA 1.4e-26 176-205
210-239

HMMPanther PTHR22942:SF1 DNA 1.4e-91 1-242

HMMPfam PF00154 RecA 5.6e-67 91-242

IPR020588 DNA recombination/repair protein RecA/RadB, ATP-binding domain

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0005524 ATP binding

Biological Process GO:0006259 DNA metabolic process

Molecular Function GO:0008094 DNA-dependent ATPase activity

ProfileScan PS50162 RECA_2 42.942 119-242

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 4.4e-38 88-238

no_ID

Gene3D G3DSA:3.40.50.300 no description 4.9e-39 120-238

HMMPanther PTHR22942 RECA/RAD51/RADA 1.4e-91 1-242

Wolf-PSORT

Lj3g3v0422710.1 chlo 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0422710.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1MI58_SOYBN	384	85.7	91.5	(tr\|I1MI58) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep	AT1G79050.2	323	74.6	80.3	\| Symbols: \| recA DNA recombination family protein \| chr1:29737364-29740140 REVERSE LENGTH=343
Medicago	Medtr8g461220.1	358	82.5	86.0	\| DNA repair and recombination protein \| HC \| chr8:21510596-21499546 \| 20130731
Soybean	Glyma15g27640.1	384	85.7	91.5
LJGI	gnl\|LJGI\|TC59902	1417	100.0	100.0	homologue to UniRef100_A8MQK1 Cluster: Uncharacterized protein At1g79050.2; n=1; Arabidopsis thaliana\|Rep: Uncharacterized protein At1g79050.2 - Arabidopsis thaliana (Mouse-ear cress), partial (50%)

IPR013765	DNA recombination and repair protein RecA
Lj3g3v0422710.1				length: 253 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003697	single-stranded DNA binding
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006281	DNA repair
Biological Process	GO:0009432	SOS response
FPrintScan	PR00142	RECA	1.4e-26	176-205 210-239
HMMPanther	PTHR22942:SF1	DNA	1.4e-91	1-242
HMMPfam	PF00154	RecA	5.6e-67	91-242
IPR020588	DNA recombination/repair protein RecA/RadB, ATP-binding domain
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006259	DNA metabolic process
Molecular Function	GO:0008094	DNA-dependent ATPase activity
ProfileScan	PS50162	RECA_2	42.942	119-242
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	4.4e-38	88-238
no_ID
Gene3D	G3DSA:3.40.50.300	no description	4.9e-39	120-238
HMMPanther	PTHR22942	RECA/RAD51/RADA	1.4e-91	1-242