Miyakogusa Predicted Gene

Lj3g3v0409470.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SRJ2_LOTJA 504 90.5 90.5 (tr|I3SRJ2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT3G14450.1 332 61.3 73.2 | Symbols: CID9 | CTC-interacting domain 9 | chr3:4849788-4851601 FORWARD LENGTH=327
Medicago Medtr2g070540.1 405 75.7 82.4 | CTC-interacting domain protein | HC | chr2:29723724-29729859 | 20130731
Soybean Glyma15g40060.1 412 75.0 82.7  
LJGI gnl|LJGI|TC61397 1610 97.1 97.1 similar to UniRef100_A7QK80 Cluster: Chromosome chr19 scaffold_111, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_111, whole genome shotgun sequence - Vitis vinifera (Grape), partial (73%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0409470.1 length: 313 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00360 RNA 8.3e-11 128-198
225-296
ProfileScan PS50102 RRM 11.963 127-202
224-300
IPR009818 Ataxin-2, C-terminal
HMMPfam PF07145 PAM2 0.00026 42-57
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.7e-11 118-197
223-296
no_ID  
HMMPanther PTHR24011 FAMILY 6.2e-137 34-308
HMMPanther PTHR24011:SF12 SUBFAMILY 6.2e-137 34-308
HMMPfam PF14259 RRM_6 3.3e-08 129-195
226-294
Seg seg seg NA 2-18
81-85
95-115
292-311
superfamily SSF54928 RNA-binding 1.8e-14 90-208
209-301
Wolf-PSORT
Lj3g3v0409470.1	E.R. 4.5, cyto 4, mito 3, E.R._plas 3, chlo 1, nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0409470.1