Miyakogusa Predicted Gene
- Lj3g3v0397400.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KP90_MEDTR |
175 |
41.3 |
56.8 |
(tr|G7KP90) F-box/kelch-repeat protein OS=Medicago truncatula GN=MTR_6g065510 PE=4 SV=1 |
| TAIR_pep |
AT3G06240.1 |
55.1 |
23.1 |
40.9 |
| Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427 |
| Medicago |
Medtr2g047892.1 |
177 |
40.2 |
56.8 |
| F-box protein interaction domain protein | LC | chr2:20974648-20975844 | 20130731 |
| Soybean |
Glyma02g04720.1 |
137 |
34.3 |
52.0 |
|
| LJGI |
gnl|LJGI|FS343486 |
704 |
100.0 |
100.0 |
similar to UniRef100_Q0J605 Cluster: Os08g0382800 protein; n=1; Oryza sativa Japonica Group|Rep: Os08g0382800 protein - Oryza sativa subsp. japonica (Rice), partial (6%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v0397400.1 |
length: 265 aa. |
| IPR017451 |
F-box associated interaction domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
9.3e-17 |
19-205 |
- Wolf-PSORT
Lj3g3v0397400.1 nucl 7, mito 5.5, cyto_mito 3.5, cysk_nucl 3.5, nucl_plas 3.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v0397400.1 |
Not targeted |
-23.380 |
-2.181 |
-3.545 |
17.98% |
-17.654
|