Miyakogusa Predicted Gene

Lj3g3v0339070.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L565_MEDTR 661 63.1 80.3 (tr|G7L565) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g012890 PE=4 SV=1
TAIR_pep AT1G62930.1 391 37.7 61.4 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23306534-23308423 FORWARD LENGTH=629
Medicago Medtr1g050495.1 672 64.1 79.9 | pentatricopeptide (PPR) repeat protein | LC | chr1:19488986-19490777 | 20130731
Soybean Glyma09g30160.1 655 61.8 79.9  
LJGI gnl|LJGI|AV772727 486 89.4 89.4 weakly similar to UniRef100_Q2HVJ3 Cluster: Tetratricopeptide-like helical; n=1; Medicago truncatula|Rep: Tetratricopeptide-like helical - Medicago truncatula (Barrel medic), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0339070.1 length: 538 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 2.2e-07 144-175
HMMPfam PF13041 PPR_2 4.5e-14 78-126
185-232
258-301
327-373
395-443
465-512
HMMTigr TIGR00756 PPR: 3.1e-08 81-115
116-149
151-176
187-221
222-256
257-291
292-326
328-361
362-391
397-430
432-465
467-500
ProfileScan PS51375 PPR 10.293 44-78
79-113
114-148
149-183
185-219
220-254
255-289
290-324
325-359
360-394
395-429
430-464
465-499
500-534
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 6.4e-09 397-525
no_ID  
HMMPanther PTHR24015 FAMILY 3.9e-167 27-532
HMMPanther PTHR24015:SF0 SUBFAMILY 3.9e-167 27-532
Seg seg seg NA 15-33
superfamily SSF81901 HCP-like 2e-06 82-472
Wolf-PSORT
Lj3g3v0339070.1	chlo 8, mito 4, extr 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0339070.1