Miyakogusa Predicted Gene

Lj3g3v0270530.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3S7T3_LOTJA 439 94.3 94.3 (tr|I3S7T3) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT3G16240.1 364 77.2 85.6 | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 | delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250

Medicago Medtr2g101370.1 406 90.0 95.7 | major intrinsic protein (MIP) family transporter | HC | chr2:43584848-43585844 | 20130731

Soybean Glyma15g02090.1 405 87.9 89.9

LJGI gnl|LJGI|TC57529 1469 100.0 100.0 similar to UniRef100_Q39800 Cluster: Delta-tonoplast intrinsic protein; n=1; Gossypium hirsutum|Rep: Delta-tonoplast intrinsic protein - Gossypium hirsutum (Upland cotton) (Gossypium mexicanum), complete

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0270530.1 length: 246 aa.

IPR000425 Major intrinsic protein

method AccNumber shortName E-value location

Molecular Function GO:0005215 transporter activity

Biological Process GO:0006810 transport

Cellular Component GO:0016020 membrane

FPrintScan PR00783 MINTRINSICP 2.5e-56 19-38
63-87
100-119
143-161
176-198
213-233

HMMPanther PTHR19139 AQUAPORIN 3.8e-156 4-245

HMMPfam PF00230 MIP 7.6e-75 15-230

HMMTigr TIGR00861 MIP: 3.9e-52 23-230

IPR022357 Major intrinsic protein, conserved site

Molecular Function GO:0005215 transporter activity

Biological Process GO:0006810 transport

Cellular Component GO:0016020 membrane

PatternScan PS00221 MIP NA 81-89

IPR023271 Aquaporin-like

Gene3D G3DSA:1.20.1080.10 no description 1.1e-69 17-239

superfamily SSF81338 Aquaporin-like 9.1e-61 8-242

no_ID

HMMPanther PTHR19139:SF58 AQUAPORIN-LIKE 3.8e-156 4-245

Seg seg seg NA 6-17

Wolf-PSORT

Lj3g3v0270530.1 vacu 6, plas 4, cyto 3, E.R._vacu 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0270530.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3S7T3_LOTJA	439	94.3	94.3	(tr\|I3S7T3) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT3G16240.1	364	77.2	85.6	\| Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 \| delta tonoplast integral protein \| chr3:5505534-5506788 FORWARD LENGTH=250
Medicago	Medtr2g101370.1	406	90.0	95.7	\| major intrinsic protein (MIP) family transporter \| HC \| chr2:43584848-43585844 \| 20130731
Soybean	Glyma15g02090.1	405	87.9	89.9
LJGI	gnl\|LJGI\|TC57529	1469	100.0	100.0	similar to UniRef100_Q39800 Cluster: Delta-tonoplast intrinsic protein; n=1; Gossypium hirsutum\|Rep: Delta-tonoplast intrinsic protein - Gossypium hirsutum (Upland cotton) (Gossypium mexicanum), complete

IPR000425	Major intrinsic protein
Lj3g3v0270530.1				length: 246 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016020	membrane
FPrintScan	PR00783	MINTRINSICP	2.5e-56	19-38 63-87 100-119 143-161 176-198 213-233
HMMPanther	PTHR19139	AQUAPORIN	3.8e-156	4-245
HMMPfam	PF00230	MIP	7.6e-75	15-230
HMMTigr	TIGR00861	MIP:	3.9e-52	23-230
IPR022357	Major intrinsic protein, conserved site
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016020	membrane
PatternScan	PS00221	MIP	NA	81-89
IPR023271	Aquaporin-like
Gene3D	G3DSA:1.20.1080.10	no description	1.1e-69	17-239
superfamily	SSF81338	Aquaporin-like	9.1e-61	8-242
no_ID
HMMPanther	PTHR19139:SF58	AQUAPORIN-LIKE	3.8e-156	4-245
Seg	seg	seg	NA	6-17