Miyakogusa Predicted Gene

Lj3g3v0247260.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B7FMT1_MEDTR 157 59.2 68.3 (tr|B7FMT1) 30S ribosomal protein S17 OS=Medicago truncatula GN=MTR_2g101770 PE=2 SV=1
TAIR_pep AT1G79850.1 140 57.3 72.6 | Symbols: RPS17, CS17, PRPS17 | ribosomal protein S17 | chr1:30041473-30041922 REVERSE LENGTH=149
Medicago Medtr2g101770.1 157 59.2 68.3 | 30S ribosomal protein S17 | HC | chr2:43788721-43787926 | 20130731
Soybean Glyma13g43360.1 151 65.6 73.6  
LJGI gnl|LJGI|TC63211 678 99.2 99.2 similar to UniRef100_P17092 Cluster: 30S ribosomal protein S17, chloroplast precursor; n=1; Pisum sativum|Rep: 30S ribosomal protein S17, chloroplast precursor - Pisum sativum (Garden pea), partial (61%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0247260.1 length: 153 aa.
IPR000266 Ribosomal protein S17
method AccNumber shortName E-value location
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
BlastProDom PD001295 RR17_ARATH_P16180; 3e-22 48-118
FPrintScan PR00973 RIBOSOMALS17 3.8e-10 66-89
98-108
108-115
HMMPanther PTHR10744 40S 1.8e-26 47-149
HMMPfam PF00366 Ribosomal_S17 2.2e-28 52-120
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 2.1e-26 47-127
superfamily SSF50249 Nucleic 2.1e-24 46-151
IPR019979 Ribosomal protein S17, conserved site
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
PatternScan PS00056 RIBOSOMAL_S17 NA 98-110
IPR019984 Ribosomal protein S17, bacterial-type
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMTigr TIGR03635 S17_bact: 1.6e-26 48-115
no_ID  
Seg seg seg NA 75-86
138-152
Wolf-PSORT
Lj3g3v0247260.1	nucl 11.5, cyto_nucl 6.5, E.R. 1, pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0247260.1