Miyakogusa Predicted Gene

Lj3g3v0235130.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL C6T8K0_SOYBN 444 72.3 77.5 (tr|C6T8K0) Uncharacterized protein OS=Glycine max PE=2 SV=1

TAIR_pep AT1G45688.1 180 38.9 51.4 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:17191502-17192870 FORWARD LENGTH=342

Medicago Medtr2g101870.1 438 70.6 77.4 | late embryogenesis abundant protein | HC | chr2:43826956-43829452 | 20130731

Soybean Glyma15g01890.2 444 72.3 77.5

LJGI gnl|LJGI|TC68356 1848 99.9 99.9 similar to UniRef100_A7P799 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (94%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0235130.1 length: 311 aa.

IPR004864 Late embryogenesis abundant protein, LEA-14

method AccNumber shortName E-value location

HMMPfam PF03168 LEA_2 3.2e-06 187-285

no_ID

Seg seg seg NA 16-26
71-93
125-142

Wolf-PSORT

Lj3g3v0235130.1 chlo 4, E.R. 3, cyto 2, plas 2, E.R._vacu 2, cyto_plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0235130.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	C6T8K0_SOYBN	444	72.3	77.5	(tr\|C6T8K0) Uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep	AT1G45688.1	180	38.9	51.4	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). \| chr1:17191502-17192870 FORWARD LENGTH=342
Medicago	Medtr2g101870.1	438	70.6	77.4	\| late embryogenesis abundant protein \| HC \| chr2:43826956-43829452 \| 20130731
Soybean	Glyma15g01890.2	444	72.3	77.5
LJGI	gnl\|LJGI\|TC68356	1848	99.9	99.9	similar to UniRef100_A7P799 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (94%)

IPR004864	Late embryogenesis abundant protein, LEA-14
Lj3g3v0235130.1				length: 311 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF03168	LEA_2	3.2e-06	187-285
no_ID
Seg	seg	seg	NA	16-26 71-93 125-142