Miyakogusa Predicted Gene

Lj3g3v0139630.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MCM6_SOYBN 523 80.1 89.1 (tr|I1MCM6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G79990.5 428 64.7 78.3 | Symbols: | structural molecules | chr1:30085910-30091949 FORWARD LENGTH=912
Medicago Medtr2g102267.1 532 82.5 90.7 | coatomer subunit beta-like protein | HC | chr2:44039290-44042383 | 20130731
Soybean Glyma15g01690.1 523 80.1 89.1  
LJGI gnl|LJGI|BW624490 755 100.0 100.0 weakly similar to UniRef100_Q8L828 Cluster: Coatomer subunit beta'-3; n=1; Arabidopsis thaliana|Rep: Coatomer subunit beta'-3 - Arabidopsis thaliana (Mouse-ear cress), partial (14%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0139630.1 length: 307 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.4e-10 93-129
134-173
180-217
223-259
HMMSmart SM00320 WD40 5.4e-09 6-45
48-87
90-129
133-173
176-217
220-259
ProfileScan PS50082 WD_REPEATS_2 14.886 13-54
97-129
140-182
183-226
227-268
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.8e-73 11-299
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 47.615 13-268
superfamily SSF50978 WD40 1e-68 3-299
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 246-260
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.7e-07 160-174
204-218
246-260
no_ID  
HMMPanther PTHR19876 COATOMER 1.1e-178 6-301
HMMPanther PTHR19876:SF2 COATOMER 1.1e-178 6-301
Wolf-PSORT
Lj3g3v0139630.1	cyto 10, cysk 2, nucl 1, plas 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0139630.1