Miyakogusa Predicted Gene

Lj3g3v0139610.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M5M4_SOYBN 1619 90.2 92.8 (tr|I1M5M4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G52360.1 1524 84.1 90.5 | Symbols: | Coatomer, beta' subunit | chr1:19499282-19505397 FORWARD LENGTH=926
Medicago Medtr2g102277.4 1624 90.2 92.0 | coatomer subunit beta-like protein | HC | chr2:44045802-44056312 | 20130731
Soybean Glyma13g43680.2 1619 90.2 92.8  
LJGI gnl|LJGI|TC75632 1727 99.7 99.7 homologue to UniRef100_A7P7E9 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (34%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0139610.1 length: 868 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.3e-13 43-79
84-123
131-167
172-209
HMMSmart SM00320 WD40 5.1e-12 3-37
40-79
83-123
126-167
170-209
ProfileScan PS50082 WD_REPEATS_2 15.789 47-79
90-132
133-176
177-218
IPR006692 Coatomer, WD associated region
Molecular Function GO:0005198 structural molecule activity    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
Cellular Component GO:0030117 membrane coat    
HMMPfam PF04053 Coatomer_WDAD 3.2e-167 271-715
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00044 555-693
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.7e-70 307-325
IPR016453 Coatomer beta' subunit (COPB2)
HMMPIR PIRSF005567 Coatomer, 0 1-844
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 45.137 5-218
superfamily SSF50978 WD40 6.1e-11 12-249
212-435
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.3e-06 110-124
154-168
196-210
no_ID  
Coil coil coiled-coil NA 813-841
HMMPanther PTHR19876 COATOMER 0 1-856
HMMPanther PTHR19876:SF2 COATOMER 0 1-856
Seg seg seg NA 649-660
811-846
Wolf-PSORT
Lj3g3v0139610.1	cyto 7, chlo 4, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0139610.1