Miyakogusa Predicted Gene

Lj3g3v0139440.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7IMD3_MEDTR 1085 82.5 86.2 (tr|G7IMD3) NMDA receptor-regulated protein OS=Medicago truncatula GN=MTR_2g102440 PE=4 SV=1

TAIR_pep AT1G80410.1 973 78.5 88.4 | Symbols: EMB2753 | tetratricopeptide repeat (TPR)-containing protein | chr1:30227963-30234832 REVERSE LENGTH=897

Medicago Medtr2g102435.1 1103 88.6 92.6 | amine-terminal acetyltransferase, putative | HC | chr2:44118961-44131775 | 20130731

Soybean Glyma13g43760.1 1084 87.4 93.4

LJGI gnl|LJGI|TC60906 1265 100.0 100.0 homologue to UniRef100_A7P7G9 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0139440.2 length: 636 aa.

IPR011990 Tetratricopeptide-like helical

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:1.25.40.10 no description 7.9e-05 6-262
365-450

IPR013026 Tetratricopeptide repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50293 TPR_REGION 7.644 9-144
380-447

IPR019734 Tetratricopeptide repeat

Molecular Function GO:0005515 protein binding

HMMSmart SM00028 Tetratricopeptide 1.8e+02 43-76
77-110
380-413

ProfileScan PS50005 TPR 6.874 77-110
111-144
223-256
380-413

IPR021183 N-terminal acetyltransferase A, auxiliary subunit

HMMPIR PIRSF000422 N-terminal 4.1e-287 1-632

HMMPanther PTHR22767:SF2 N-TERMINAL 0 1-612

HMMPfam PF12569 NARP1 2.9e-174 186-612

no_ID

Coil coil coiled-coil NA 195-216

HMMPanther PTHR22767 N-TERMINAL 0 1-612

HMMPfam PF13414 TPR_11 1.1e-07 79-126

Seg seg seg NA 427-440
590-612

superfamily SSF48452 TPR-like 6.6e-08 6-262
233-469

Wolf-PSORT

Lj3g3v0139440.2 cyto 9, nucl 5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0139440.2 Not targeted -72.276 -3.201 -15.013 96.90% -54.061

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7IMD3_MEDTR	1085	82.5	86.2	(tr\|G7IMD3) NMDA receptor-regulated protein OS=Medicago truncatula GN=MTR_2g102440 PE=4 SV=1
TAIR_pep	AT1G80410.1	973	78.5	88.4	\| Symbols: EMB2753 \| tetratricopeptide repeat (TPR)-containing protein \| chr1:30227963-30234832 REVERSE LENGTH=897
Medicago	Medtr2g102435.1	1103	88.6	92.6	\| amine-terminal acetyltransferase, putative \| HC \| chr2:44118961-44131775 \| 20130731
Soybean	Glyma13g43760.1	1084	87.4	93.4
LJGI	gnl\|LJGI\|TC60906	1265	100.0	100.0	homologue to UniRef100_A7P7G9 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)

IPR011990	Tetratricopeptide-like helical
Lj3g3v0139440.2				length: 636 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:1.25.40.10	no description	7.9e-05	6-262 365-450
IPR013026	Tetratricopeptide repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50293	TPR_REGION	7.644	9-144 380-447
IPR019734	Tetratricopeptide repeat
Molecular Function	GO:0005515	protein binding
HMMSmart	SM00028	Tetratricopeptide	1.8e+02	43-76 77-110 380-413
ProfileScan	PS50005	TPR	6.874	77-110 111-144 223-256 380-413
IPR021183	N-terminal acetyltransferase A, auxiliary subunit
HMMPIR	PIRSF000422	N-terminal	4.1e-287	1-632
HMMPanther	PTHR22767:SF2	N-TERMINAL	0	1-612
HMMPfam	PF12569	NARP1	2.9e-174	186-612
no_ID
Coil	coil	coiled-coil	NA	195-216
HMMPanther	PTHR22767	N-TERMINAL	0	1-612
HMMPfam	PF13414	TPR_11	1.1e-07	79-126
Seg	seg	seg	NA	427-440 590-612
superfamily	SSF48452	TPR-like	6.6e-08	6-262 233-469